| New model in OGS2.0 | DPOGS201672 |
|---|---|
| Genomic Position | scaffold85:+ 76962-79149 |
| See gene structure | |
| CDS Length | 1266 |
| Paired RNAseq reads | 396 |
| Single RNAseq reads | 1429 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005459 (4e-140) |
| Best Drosophila hit | CG11109, isoform B (8e-70) |
| Best Human hit | putative methyltransferase NSUN6 (1e-68) |
| Best NR hit (blastp) | hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae] (2e-86) |
| Best NR hit (blastx) | hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae] (7e-80) |
| GeneOntology terms | GO:0005730 nucleolus GO:0008649 rRNA methyltransferase activity GO:0003723 RNA binding |
| InterPro families | IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site IPR002478 Pseudouridine synthase/archaeosine transglycosylase IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p IPR023267 RNA (C5-cytosine) methyltransferase |
| Orthology group | MCL17387 |
Nucleotide sequence:
ATGGATTCACCTCAATTACAAGCATGGCTCGCAGAGGCGCCAAAATACACAATATTTAGA
GTGAATAAATTAATGCAATTTAACGATACAAAGATTAAAAGTGTATTAGAACAGCAAAGG
AGAGAATTAAACTGCCATTCTACTCCTGCGTATTATTTAATAAAACCGGACTGTCTCATC
GTGGAACAATGGCCGGAAAATGTGGTAATAAAAAGAGGAAATATCGAGGTAGTAGTGGAT
TCAATGTGTGCAGCCGCAGTTTTAAGAGGCGCTCATGTGTATGCTCCTGGGGTGCTTGGT
TTACCTACCAATTGCAGTCTCAATGAAAGAGTTGATATATATGGTGACTTAGATGGCCAC
TGTAAGAGAGGCTTAAAGGTTGAGTATAAAGGAAGAAAAATATATGTTGGTACCGGCTAC
ATTAGAATGTTGCGTTATCAGTTATTTGACGATGGAGTCCAACCGAATGGTATAGCAATA
GAAACCTTGCTCCCGGCATCAAGACTTCCTGTGATAAATGAATCTATGTATCCTAAAGGA
CATTTAGTATTACAAAACCTGCCATCTATCATAACAGGTTGGGTGGTCAATGCACAGCCC
AATGAACATATATTAGACATGTGTGCCTCACCAGGAAATAAAACAACTCATTTAGCGGAA
ATGTCCAATAACCAAGCTCACATCACAGCAATTGATAAAACTGATAAAAAAGTTATTAAA
ATCCGTCAATCTTGCGAAACTCAGGGTGTCACCTGTGTTCATACATTTGCGTTTGATTCA
ACAAAATGTCATTCGGATGAAGCAAACAATGAAAAAGGGCCCCCATACAAATCAAACACT
TTTGATAAAGTGCTATTGGACGCTCCTTGCAGTGGCTTGGGACAACGGCCTCTCTTGAAC
AATAAAATGACTGCCAAAATGCTTCAATCCTATAAGTTTGTGCAAAGAAAGCTTTTTGAT
TCAGCTGTGAAAGTTTTAAAAGTCGGGGGTAAGCTTGTATACAGTACATGTACAGTTACT
GTAGAGGAAAATGAAGGAATGGTGAGCTGGGTATTGGATAAATATTCTTGTATGGAACTC
ATTCCCGCTGAACCACTACACGGTGGGCCGGGACAACCGAATGTAGGTCTGAATGATCAA
CAAAGAGTGATGGTACAGCGATTCGGTCCAGATAACGATCCACTCAGACCGGTGGAAGAT
TTGTACAGGAATACTATAGGTTTCTTTATAGCAGCCTTCACAAAAAATGATGAGCATTGC
GCATGA
Protein sequence:
MDSPQLQAWLAEAPKYTIFRVNKLMQFNDTKIKSVLEQQRRELNCHSTPAYYLIKPDCLI
VEQWPENVVIKRGNIEVVVDSMCAAAVLRGAHVYAPGVLGLPTNCSLNERVDIYGDLDGH
CKRGLKVEYKGRKIYVGTGYIRMLRYQLFDDGVQPNGIAIETLLPASRLPVINESMYPKG
HLVLQNLPSIITGWVVNAQPNEHILDMCASPGNKTTHLAEMSNNQAHITAIDKTDKKVIK
IRQSCETQGVTCVHTFAFDSTKCHSDEANNEKGPPYKSNTFDKVLLDAPCSGLGQRPLLN
NKMTAKMLQSYKFVQRKLFDSAVKVLKVGGKLVYSTCTVTVEENEGMVSWVLDKYSCMEL
IPAEPLHGGPGQPNVGLNDQQRVMVQRFGPDNDPLRPVEDLYRNTIGFFIAAFTKNDEHC
A