| New model in OGS2.0 | DPOGS207375 |
|---|---|
| Genomic Position | scaffold604:- 15369-16607 |
| See gene structure | |
| CDS Length | 1044 |
| Paired RNAseq reads | 193 |
| Single RNAseq reads | 554 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | CG31812 (9e-13) |
| Best Human hit | tRNA-splicing endonuclease subunit Sen2 isoform 3 (3e-21) |
| Best NR hit (blastp) | PREDICTED: hypothetical protein [Nasonia vitripennis] (1e-35) |
| Best NR hit (blastx) | PREDICTED: hypothetical protein [Nasonia vitripennis] (7e-35) |
| GeneOntology terms | GO:0016787 hydrolase activity GO:0008033 tRNA processing GO:0004518 nuclease activity GO:0004519 endonuclease activity GO:0006397 mRNA processing GO:0000213 tRNA-intron endonuclease activity GO:0000214 tRNA-intron endonuclease complex GO:0003676 nucleic acid binding GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation GO:0003674 molecular_function GO:0008150 biological_process GO:0005634 nucleus GO:0005575 cellular_component |
| InterPro families | IPR011856 Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal IPR006676 tRNA-splicing endonuclease IPR006677 tRNA intron endonuclease, catalytic domain-like IPR006678 tRNA intron endonuclease, N-terminal |
| Orthology group | MCL15781 |
Nucleotide sequence:
ATGCAATCAAAAGATTGCTGTCAAATGAATGAGAAAAGTAGCACATCTATGGATGAGGAA
AAGACACTTCGTTTTCCTTTGGTTGACTCTATGTGTATTCTGTTTACTGGTTATTTTAAT
GGTGTAGGTGTTGAGATTAGGTCTACTGATGCAATGGCACTCTTGCATCATATAGGTTGC
TATGGTAAAGGAAATACTTCCAAATCTAGACCTAAAGTTAAGAAGGAAGGAAGTCCAATT
ATTATGAGAAAGAGACAATTTTTAAAAAGAAGTTATTGGTACAAGAGGTTTGGAAATGAA
GAGAAAAATGAAGAGTCAGATTTTTTTTTTAAAGATGTTTATGATTTGATAAAAAAAATC
AAACGGGACACAAAAAAGGGTGTTATTGACTTGGTTTCGAGTGATGATGATGGTGGTGAT
GGTATGTCACAATTTTTAAACAACCATTCACCATCTCACACTCCTCATGAACAAGACATT
GTAGTTGTTGTGGCCAATAGTGACTCTGAGGATGATAATTATTTTGCAAATTTAAAACCT
CAATGTTGCCTGAATAAAGTATCCCTGCAGGAAAAGCTTATGCTTACATTACAAGAAGCA
TTCTTCTTGGTATACGGACTTGGTTGTTTAAAAATTGTGAAGGAAGAAGACCAAGTATTG
AACATAGAGGAATGCTGGTCACTCTTTTGTAATACAGACAAATACTTTGTCAGTAAATAC
ATAGTTTACCATCACTTTAGATCTAAAGGGTATGTTGTGAAATCAGGAATTAAATTTGGT
GGGGATTTCTTGTTGTATAAAGAGGGACCGGAAGTAAATCATGCTGATTATATTGTTGTT
ATCAAGACTGAAAATGATACATTTAACTGGATATCTTTGTTGGGTCATGTCAGAATGGCT
ACAACAACGGTGAAGGAAGTTATGATTGCTGAGGTGAAATCTGAAGGTGAAAATCTACGT
CTACCACATGACTTGTGTAAATATAGTGTTCGGGAGTTGGTACTGTCAAGGAACTTACCA
GTAATAAACAATGAAATAGACTAA
Protein sequence:
MQSKDCCQMNEKSSTSMDEEKTLRFPLVDSMCILFTGYFNGVGVEIRSTDAMALLHHIGC
YGKGNTSKSRPKVKKEGSPIIMRKRQFLKRSYWYKRFGNEEKNEESDFFFKDVYDLIKKI
KRDTKKGVIDLVSSDDDGGDGMSQFLNNHSPSHTPHEQDIVVVVANSDSEDDNYFANLKP
QCCLNKVSLQEKLMLTLQEAFFLVYGLGCLKIVKEEDQVLNIEECWSLFCNTDKYFVSKY
IVYHHFRSKGYVVKSGIKFGGDFLLYKEGPEVNHADYIVVIKTENDTFNWISLLGHVRMA
TTTVKEVMIAEVKSEGENLRLPHDLCKYSVRELVLSRNLPVINNEID