New model in OGS2.0 | DPOGS203951  |
---|---|
Genomic Position | scaffold2:+ 16661-27523 |
See gene structure | |
CDS Length | 1869 |
Paired RNAseq reads   | 97 |
Single RNAseq reads   | 263 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000480 (2e-139) |
Best Drosophila hit   | scabrous, isoform A (6e-86) |
Best Human hit | angiopoietin-4 precursor (1e-26) |
Best NR hit (blastp)   | PREDICTED: similar to scabrous protein [Tribolium castaneum] (1e-113) |
Best NR hit (blastx)   | PREDICTED: similar to scabrous protein [Tribolium castaneum] (7e-112) |
GeneOntology terms    | GO:0048749 compound eye development GO:0007399 nervous system development GO:0008407 bristle morphogenesis GO:0005577 fibrinogen complex GO:0005576 extracellular region GO:0046331 lateral inhibition GO:0045468 regulation of R8 cell spacing in compound eye GO:0007460 R8 cell fate commitment GO:0004871 signal transducer activity GO:0016321 female meiosis chromosome segregation GO:0016318 ommatidial rotation GO:0005102 receptor binding GO:0007165 signal transduction GO:0008587 imaginal disc-derived wing margin morphogenesis |
InterPro families    | IPR002181 Fibrinogen, alpha/beta/gamma chain, C-terminal globular IPR014716 Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 IPR014715 Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2 |
Orthology group | MCL16339 |
Nucleotide sequence:
ATGGAGTTCGTTAAACTTTGGGCGCTAATTATTTGTTTGTGTTCGGTGAACGCTCGCGAA
ATTGACATTAAAAATGAATTGCTATCCCTGACCGAACAATTCAAGGCTCTGAAGACCGTG
CATCTGGCTGATGTTTCCCGCCTCAAAGAAGAGATTAAGGAACTCAAGAAGCACGCTGCT
AATACGTTCACTGAGAACTACACTCGCAATGAACAAGCAACTCTGCAATGGGCGAAGAGT
TCCATGAGGGAACTTCGAATTGAAATGCGTGAACTAAGTCAAAGTATTAACAGCTCGGTA
CTGCTGCGACAATTGCAAAACATCCGCAACGAGTTAAAACGGGCATTGTCTGAGAACACG
GACCTGGCTCAGTTAGCTCGTACTCAGGAGGCGCGAGTGGACAAATTGGATAGCGAAGTC
GGCCGGCTCAAATACGACAGCCAAGAAATAAGAGGCATGGTCGCTGAGATACGCAGTCAA
GTCGCGAAACTCTCAAAGGAGATTAAATTGAAGACACTCAATGAAGATAGCTTCAATGAT
GTCCTAGAGCCATACGAAAAACATGCTTCAGACTCGCATCCTAAGCATGGACACAAAATA
CGCCACAACAAAATGGTGCACGCCCAAATATCCCGTTTGGCCCGCAGCCAAAATCAGTTG
GATGAATACCAACAGCACTTGCAGACTCAACTCCTCGATGTGCTTCGTCGCCTCGACCGC
ATTGAAGAAGCTAACTGGAATCTGGTTTCAACTCGAGTAGATTACCTTGCAACTGAAACT
AACACAATCAAAAATGAACTGAACAATGTAACCCAACGAGTGGCCGACTTTGATAAAGTC
CATGCCTCTATGCTTGAACTGCGCGAGGACGTTGAAAGCATTGAGAACAAAGCTGACAAA
ACAATTCCCGAGTTTAGAAAAGAGATATCTAAACTGGATCTTAGCTTCGCCCAGCTCAAC
GCTCAATCTTCTTATCTAAAAGAGGACCAAGAGAATCTCCGTCAATCTGTTAAGGCCATC
GCAGTCAGCGTGAGCAACACCATTGATCGTGCCGAAATGGATCGTCTCGTTATCAAAGCT
CTCAATGACTCTGTGATCGGTCTCGAAAATATAAGCAAGCAACACTACTACCGCCTTAAC
GATCACATTCTCAAGAGTGAAGCCAATAAGACAACAATGATTAGTCAATATATTCCGCTC
CCTGAACTTATTGATGAAGTTAAAGAGCTTCAACCCCTGGAACGTGAGTATGAAAATCTG
GTTGTTCAATTACCTAAGGATTGCTCAAGCGTGACTGGACCTGACCAAGTTTATTTAATA
AACCCTGGCCATTCTCCGATTGAGACCTTTTGTACCAATGGAAGTACCCTTATTCAACGA
CGTTACAACGGATCCGTAGAATTTAATAGGAAATTTGCTCAATACGTGCAAGGTTTTGGT
AACGCAGCCTCCGAATTTTGGCTTGGCTTGGAATCGATGCACCAATTGACCGCTGATAAC
TGCTCTTCTATGAGGATCGAGATGACCGATATTTATGGAAGCTCTTGGCATGCTGAATAT
GATCATTTCTCCGTTGGAAGCGCTGATACTGGATATGTTTTGACTGTGAGCGGTTTCAGA
GGCAATGCTAGTGACGCTTTTGAGTACCAAAACCATATGGAATTTTCTGCCATCGACCAC
GACAGAGACATCTCGAATACTCATTGCGCTGCCAACTATGAAGGAGGTTGGTGGTTCTCT
CATTGCCAGCACGTGAATATCAATGGCAAGTACACTCTTGGTTTGACCTGGTTTGACTCT
CTAAGGAATGAGTGGATAGCGGTTGCAACCAGTGAGATGCGCCTATTCCGTAACAAACGC
TGTACTTAA
Protein sequence:
MEFVKLWALIICLCSVNAREIDIKNELLSLTEQFKALKTVHLADVSRLKEEIKELKKHAA
NTFTENYTRNEQATLQWAKSSMRELRIEMRELSQSINSSVLLRQLQNIRNELKRALSENT
DLAQLARTQEARVDKLDSEVGRLKYDSQEIRGMVAEIRSQVAKLSKEIKLKTLNEDSFND
VLEPYEKHASDSHPKHGHKIRHNKMVHAQISRLARSQNQLDEYQQHLQTQLLDVLRRLDR
IEEANWNLVSTRVDYLATETNTIKNELNNVTQRVADFDKVHASMLELREDVESIENKADK
TIPEFRKEISKLDLSFAQLNAQSSYLKEDQENLRQSVKAIAVSVSNTIDRAEMDRLVIKA
LNDSVIGLENISKQHYYRLNDHILKSEANKTTMISQYIPLPELIDEVKELQPLEREYENL
VVQLPKDCSSVTGPDQVYLINPGHSPIETFCTNGSTLIQRRYNGSVEFNRKFAQYVQGFG
NAASEFWLGLESMHQLTADNCSSMRIEMTDIYGSSWHAEYDHFSVGSADTGYVLTVSGFR
GNASDAFEYQNHMEFSAIDHDRDISNTHCAANYEGGWWFSHCQHVNINGKYTLGLTWFDS
LRNEWIAVATSEMRLFRNKRCT