| New model in OGS2.0 | DPOGS203979 |
|---|---|
| Genomic Position | scaffold2:+ 910135-919881 |
| See gene structure | |
| CDS Length | 2283 |
| Paired RNAseq reads | 907 |
| Single RNAseq reads | 2587 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002116 (0.0) |
| Best Drosophila hit | roquin (3e-142) |
| Best Human hit | roquin (3e-148) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP007114-PA [Tribolium castaneum] (2e-176) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP007114-PA [Tribolium castaneum] (6e-155) |
| GeneOntology terms | GO:0005515 protein binding GO:0005737 cytoplasm GO:0003723 RNA binding GO:0046872 metal ion binding GO:0045623 negative regulation of T-helper cell differentiation GO:0008270 zinc ion binding |
| InterPro families | IPR001841 Zinc finger, RING-type IPR000571 Zinc finger, CCCH-type IPR013083 Zinc finger, RING/FYVE/PHD-type IPR017907 Zinc finger, RING-type, conserved site |
| Orthology group | MCL11611 |
Nucleotide sequence:
ATGCCAATTCAGGCGCCACAATGGGCGGACTACCTCAATTGTCCAGTGTGCTGCCGAGAC
TTTGGCCTCCCGCCAAGGAGCCCCATCAGCCTTGGATGCGGTCACACACTGTGCGGGCAT
TGCATTAAACACCTTCATCGTAAACATTGCCCATTCGATCAGACAATCATCCATCCAGAC
CCTGAGGAATTAGTAGTAAACACGGCACTACTACAGATAGCGGGTTACACTCCGCCAGCG
CAGCCCTACCATCCCCCAAGTATCCAGGCTCTGCCTGAGCGTGACAGGCATGCATATGAT
GTTATAGTCCGCAGTCTTGAACATCTCGCCATTTATCTAAAACTATGTGCGACCAGTAAC
ACGGGTAATCGTCTGTCCCGGCCTATGCAGCGTAAATTGGTGACCTTACTACAGTGCGCT
ATAACTGATGAAGAGGGACGTGGCAGGGCGGCACGGGCTGTCCGCTCACTCGGTGAGAGG
ACAGTCACGGAGCTCATACTGCAGCATCAGAATCCCCAGCAACTCAGTGCTAACTTGTGG
GCTGCGGTCCGTGCTCGCGGCTGTCAGTTCCTTGGACCAGCGATGCAAGAAGAAGTTCTA
AAATTAGTGCTTCTAGCCCTTGAAGATGGTTGTGCACTTTCTAGAAAGGTACTAGTGATG
TTTGTTGTCCAAAGATTGGAGCCCCACTTTCCTCAGGCTTCAAAGACGAGTATCGGTCAT
GTAGTTCAGCTTCTTTACAGGGCCTCTTGTTTCAAGGTATCAAAGCGAGAAAGTGATTCA
TCGCTTATGCAACTGAAGGAAGAGTTCAGAACGTATGAGTCGCTACGTCGAGAACATGAT
GCTCAGATAGTACAAATAGCGACCGAAGCCGGTTTGAGGATAGCACCGGATCAGTGGAGC
GCTTTACTGTTTGGAGACACAGCTCATAAGAGTCATATGCAGAGCATCATAGATAAACTT
CAAACGCCACAGTCTTTTGCGCAGTCTGTACAGGAGCTGTTTATAGCTCTTCAAAGGACC
GGTGACCCAGCTCAATTGGTCGTAATGAGCATGCATTTAGATCGACTCGCTAACATCGAT
GCAAGCCCCGATGCGAAGTATCCCAGCTGGCAGTCCCTGGCTGAGATGATAACATCCATA
AAGGAAGTCGTTGCTGGTCTGGTGCACTACTTACAGCATCAGACCGGTAGCCGAGACGCA
AACCACAACCAGAAACATTTGCAGGCCCCAATAGAACCTTCGACAAGTCAGCCATCCACA
CAAATAGTGACAACCCCGACCCATAAATACAAGACCTCTATGTGTCGTGATGCCGTCACA
CGCTCATACTGCCCGAGAGGCAACGCTTGCACCTACGCACACTATGAAGAGGAACTTGAG
AGATACAGGTGCGTGCCAAACAGCTCGGCTGTGAACAATGGCAACTACTACATACAGAAC
GTACCAAACATACAGAACGTTCAAAACATGCCAAACATCCCCAACATACCGGTGGCGTCG
ATGCTGCCGCCGATGCAGCCGATACTGCCGCAGATATATCCCCGCTATCCTCTACAACAC
CACGTCGAAAACTATGTTCCACCAGTGCAACCCATACCAGCACCACCGCTGCCACAGGAA
ATGATCCCAAACCCAGAGTATGCTCCGGACAACCCGCGTCCTGAATGCATTCAACAAACG
AATTATGCGTCTGCCCTCGTGCCAAACCAGGCTTCCGTGCCTATCAACCAAAAAGGGCTG
ATGATACCATTAACAGAGCGGCCATACTACCCTCGCTACGTGACCATTCACGAAGAGCCG
TCAAACAATCTACAGTACGTTAGGACGGAGTACGTCAGTCCTGTATATCAAGGACCCAAC
AACGCTGGCCCTGTAGCTAGCTATCAGGAACAGACTATCCCCATGCCAAATATGTTCGTG
CCGGTGCAACGCGAACCACAAAGAAATATCAGCCCGTACGCCTTTGATGATCCTATATCA
TCAGAGTTACTGCCGGAGTATCGTGTGAAAACGGGTTATACTCCAAGGGAACTTAACATT
GAGCCCACCTGGCCGCCCGCAAACAACGTATTTAATTTTGATCCAATGAGGAATGCATTA
CCACACTGTCCATCTACGGCAGAAGATATGTTCTCTGTACCGAACGATCGTAGAGTTGTT
GGAGCGGACAGACTCACCTCAGTGGCTGATAGACTCACCAACAGAGCGGATGACCAGGAA
CTGGAAGAGGAGCTGCAAGCTTTAGAGCGTCGCATCGACACCGAGTTTAAGAGCACCGAC
TGA
Protein sequence:
MPIQAPQWADYLNCPVCCRDFGLPPRSPISLGCGHTLCGHCIKHLHRKHCPFDQTIIHPD
PEELVVNTALLQIAGYTPPAQPYHPPSIQALPERDRHAYDVIVRSLEHLAIYLKLCATSN
TGNRLSRPMQRKLVTLLQCAITDEEGRGRAARAVRSLGERTVTELILQHQNPQQLSANLW
AAVRARGCQFLGPAMQEEVLKLVLLALEDGCALSRKVLVMFVVQRLEPHFPQASKTSIGH
VVQLLYRASCFKVSKRESDSSLMQLKEEFRTYESLRREHDAQIVQIATEAGLRIAPDQWS
ALLFGDTAHKSHMQSIIDKLQTPQSFAQSVQELFIALQRTGDPAQLVVMSMHLDRLANID
ASPDAKYPSWQSLAEMITSIKEVVAGLVHYLQHQTGSRDANHNQKHLQAPIEPSTSQPST
QIVTTPTHKYKTSMCRDAVTRSYCPRGNACTYAHYEEELERYRCVPNSSAVNNGNYYIQN
VPNIQNVQNMPNIPNIPVASMLPPMQPILPQIYPRYPLQHHVENYVPPVQPIPAPPLPQE
MIPNPEYAPDNPRPECIQQTNYASALVPNQASVPINQKGLMIPLTERPYYPRYVTIHEEP
SNNLQYVRTEYVSPVYQGPNNAGPVASYQEQTIPMPNMFVPVQREPQRNISPYAFDDPIS
SELLPEYRVKTGYTPRELNIEPTWPPANNVFNFDPMRNALPHCPSTAEDMFSVPNDRRVV
GADRLTSVADRLTNRADDQELEEELQALERRIDTEFKSTD