| New model in OGS2.0 | DPOGS203991 |
|---|---|
| Genomic Position | scaffold2:+ 1160631-1163864 |
| See gene structure | |
| CDS Length | 3234 |
| Paired RNAseq reads | 296 |
| Single RNAseq reads | 711 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002136 (0.0) |
| Best Drosophila hit | Semaphorin-5c, isoform A (3e-12) |
| Best Human hit | hemicentin-1 precursor (2e-23) |
| Best NR hit (blastp) | hypothetical protein BRAFLDRAFT_85664 [Branchiostoma floridae] (5e-45) |
| Best NR hit (blastx) | hypothetical protein BRAFLDRAFT_219194 [Branchiostoma floridae] (2e-37) |
| GeneOntology terms | GO:0003674 molecular_function GO:0008150 biological_process GO:0005576 extracellular region GO:0005604 basement membrane GO:0005938 cell cortex GO:0030054 cell junction |
| InterPro families | IPR000884 Thrombospondin, type 1 repeat IPR001791 Laminin G domain IPR008985 Concanavalin A-like lectin/glucanase IPR013320 Concanavalin A-like lectin/glucanase, subgroup |
| Orthology group | MCL39642 |
Nucleotide sequence:
ATGCTAACGCAACAGCAGAATAAAAGTGCTATAATTTTGTTAATTTTATTTATTTTATCT
GAAACCAAAAAACCCTTTACTAAAAGACTTGAGGCTTCCTGGCGTTTGGAATGTGATTTG
GGTATTATAACAGATTCCGACTGTCCAATTGATGGTGGATGGTCCCCTTGGGCACCATGG
TCTAAATGTTATGGCGCCTGTGATAGCGTTGGTCACCGTAAAAGATTAAGAACATGCAAC
AATCCAACACCTTCAAAAGATGGTATGCCTTGTAGAGGTTTTGATGAACAGTTGGAATCT
TGTTACTTAACGAATTGTTCTGTCAAGGATTTCCGCAATATCGTTGAGGGGGACCCTGCT
AGAGAAGAAGCATTACATCAACTAGAAGCGGTTCCTTTATTAATGGAAAGATGTCTGCAG
ATGGAATGTCCTTTTGAAGCTGTTGATGCTACATTAGCAATTGAAAATACTTGGCAAATA
AATTCAGAAACCGTGTGGAATGCACTTCAATGCGTAAAGCATGACATTGGATGCCCTATT
GCGGGTGACTGGGGCGCTTGGGGTTCGTGGTCGTCTTGTGGCGCTCGCTGCGGTAAAGGT
ACTCGTTGGAGAATGAGACGCTGTGATACACCGCCCCCCTCTCTATCGCATTTGATTTGT
CCAGGAACGCCACTGCAATACGAACAATGTGAAGGAGATCAATGTGCGATCGACGGTCAA
TACGTTGAGCAAAGTGGCAGTTGGAGCGAATGGGGTGCCTGGACTGAAAGTTCAGAGAAA
TGTGGCTATGGAGTTCGTCGTAGGAAAAGGGCTTGTGTCGAGAAGCAACTAGCACTTTCT
GCTATAAATTGGGGAACACATTGTAGAGGACAGTATGACGAATTAGATGTTTACTATAAC
ACAGAATGCGTTTTGGATGGAGGCTGGTCTGGTTGGGGACCATGGGGGCCGTGTTCTCAA
ACATGTGGCGCTGGCAGACGTTCAAGAACTAGATCCTGTACAAGACCAATACCTTCGGGC
AATGGTACCGATTGTGTGGGACCAAAATCTGACGTTGGGACATGTCATTTAGCGCCTTGT
GAAGTTTTTACACACACTATTTCTTTACTTAATGGTGACTCTTATATGCACTATAATTTC
CCACGCAAAAGATCAACCTTCTTTCATTTTTATATCCGTTTTATGGCACTTTCTCCCCAC
GGAATCATTGTTCGACGTGGAAGTGCTCAAAATCCAAGTGTTCGATTAAGTTTGCAGAAG
TGGCATGTTTGTCTAGACGCTAGCGGTTTGTCCAAATCTTGCAGTTTACCTCGTATGTGT
TCAACAACAGCAATCGAGCCTGCAACATGGCATTCAATCTTAATGTCTGTTACGAGCCAA
GTAGCTATCATAAGATTAAATGACGCCCAAATATCAATGCAGAACTGGTTTCCTTGCAAT
CCTGAATTAGAAAATGACAAAATGAATATTTTTATTGGAGAAAAGTTTCATGGCGAAATT
CATGAAATTATGCTTAATTTTATTCCATTACATACCATTATTGAACGGGAACAGCGAATG
AGTCAATCAGATTTCTATCCTATTTCAACGTCTAACATGGCCTATGAAAAAGCTAGCCCT
GAAGAAGCTTATTTACTAATACAAAACGATCAATATTTACGTTTGCCTTGTTTTAAGGAA
CAAGATGAATGGCAAATTGAATTGACAATTAAATCTGAAAAAGAAAGTGGTACAATAATT
TTACTTCCAAATAACATAAACGATAACTGGTTGTATGTAATTTTACAAAATATGAGATTA
AAAATAAAATTTGCTCGAAAGGAATTCAAGTCGGAAGCAATTAGTTCAACTGAATTTTTA
CCTGATCAATGGATGGATATAGTTATAAGTAAAAAAAGAGAAACCAATACTATTGTAGTA
TCAATAAACGCAGGAGAACGTCTTCACGTACTTTTGATAGAAGAAACAAAAAAAATTGGA
AAATCACGTATCAATAACAAACATGTACTTCAGGGCCAAAATTATAATCACAGTTTCATA
AACAATAACAAGATTGTAATATGCAATGATGAATTTTTTATTGGCGGCGTACCGCTTGAT
ATAAAAAATTCTATATCAGAAGATTTTACACCTTTTACGGGAATAGCAGCCTCAGTAAGG
TTAAATAATAATTTGTTAGATTTACACGATTTCAGTATGGAGCGGACCAAAAACGACCTA
ATTCAACTCTCTTCAAGAACTGCTAGTATTTCAGGATCATATCATGAAACCGAATGGGGT
GAATCAAACCAGTTCAATTTAACATGTCTACATGCCCGAACAGCAAGTTTACCACATTCA
GCCTATTGGCTTTATTGGGATACCCAAATAAAAATCATAAAAAGTAAAAATGCACGTTCC
GTAGATGATGGAAGAGTTTTACGTTTGTTGGTAACAGCTGAAAAAGACCTTAGGGGATAT
TATACTTGTAGAGCACATAGTAATAGACGCACAAGGAACATCGTTACGTTCGGCGTTTTA
GGAAAAATACAATATAAAAGTTTGAGCCCCGACACGTTAACTGTGATTGCAATTTGCACT
ACACTGTCTTTAGTAATATTTACTTTGGCCTGGCTTATAATAGAAGGATATCACGACCTT
CGTAATGGTTATGGATTTTTTAGAGACGCCCATCTTTCCCCCGAAGAGGAGGCGGAAGTG
GTTTGTCAATATTTCGAACAAAACATGCACTTACTTGGATCGCAAAGTGAGGTTAATCTA
GCTAAGACGAAAGCAAGGCGCAGAGGTAAGCGGTTGGCTAGTAAAGCAAGTTTTGGAGTA
CAGGAACCAGATAACATGTTAGAAGGAAATAATGCACTAGAAGAATTCACTTCTAGCGAT
CCCGAGGGTTTACCTACTTTACCTGAGATAAAAAATTCTGGCATAGAATTTTTTCATAAA
ATTTATAGATATGAACCTTCCTACGTTAGTTCTCCCCGCCATGGCTCCCTTACCACCCGA
ACAAAACTATCTTCAACCTCGTCTTTAGACTCACTTGCAAAAGTGTTAGGTTCCCCCTCC
TATGTACGTAAGATCGCTAATTTATCTAAAGATAATAAAAGGATTAAAAACTGCCGCTTT
AAGAAAGCCAAAAATGAATCAAATCTACTGACCATAAAGTCTTCAACGTTTCTCAAAAAA
TCACCGGCACATAAGGTGTTGGAAAAATTTCAGGAATTAAAGAGCGATGATTAA
Protein sequence:
MLTQQQNKSAIILLILFILSETKKPFTKRLEASWRLECDLGIITDSDCPIDGGWSPWAPW
SKCYGACDSVGHRKRLRTCNNPTPSKDGMPCRGFDEQLESCYLTNCSVKDFRNIVEGDPA
REEALHQLEAVPLLMERCLQMECPFEAVDATLAIENTWQINSETVWNALQCVKHDIGCPI
AGDWGAWGSWSSCGARCGKGTRWRMRRCDTPPPSLSHLICPGTPLQYEQCEGDQCAIDGQ
YVEQSGSWSEWGAWTESSEKCGYGVRRRKRACVEKQLALSAINWGTHCRGQYDELDVYYN
TECVLDGGWSGWGPWGPCSQTCGAGRRSRTRSCTRPIPSGNGTDCVGPKSDVGTCHLAPC
EVFTHTISLLNGDSYMHYNFPRKRSTFFHFYIRFMALSPHGIIVRRGSAQNPSVRLSLQK
WHVCLDASGLSKSCSLPRMCSTTAIEPATWHSILMSVTSQVAIIRLNDAQISMQNWFPCN
PELENDKMNIFIGEKFHGEIHEIMLNFIPLHTIIEREQRMSQSDFYPISTSNMAYEKASP
EEAYLLIQNDQYLRLPCFKEQDEWQIELTIKSEKESGTIILLPNNINDNWLYVILQNMRL
KIKFARKEFKSEAISSTEFLPDQWMDIVISKKRETNTIVVSINAGERLHVLLIEETKKIG
KSRINNKHVLQGQNYNHSFINNNKIVICNDEFFIGGVPLDIKNSISEDFTPFTGIAASVR
LNNNLLDLHDFSMERTKNDLIQLSSRTASISGSYHETEWGESNQFNLTCLHARTASLPHS
AYWLYWDTQIKIIKSKNARSVDDGRVLRLLVTAEKDLRGYYTCRAHSNRRTRNIVTFGVL
GKIQYKSLSPDTLTVIAICTTLSLVIFTLAWLIIEGYHDLRNGYGFFRDAHLSPEEEAEV
VCQYFEQNMHLLGSQSEVNLAKTKARRRGKRLASKASFGVQEPDNMLEGNNALEEFTSSD
PEGLPTLPEIKNSGIEFFHKIYRYEPSYVSSPRHGSLTTRTKLSSTSSLDSLAKVLGSPS
YVRKIANLSKDNKRIKNCRFKKAKNESNLLTIKSSTFLKKSPAHKVLEKFQELKSDD