| New model in OGS2.0 | DPOGS210106 |
|---|---|
| Genomic Position | scaffold5182:+ 3506-7451 |
| See gene structure | |
| CDS Length | 1431 |
| Paired RNAseq reads | 9536 |
| Single RNAseq reads | 23518 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012687 (0.0) |
| Best Drosophila hit | Sec61alpha (0.0) |
| Best Human hit | protein transport protein Sec61 subunit alpha isoform 2 isoform a (0.0) |
| Best NR hit (blastp) | transport protein Sec61 alpha subunit [Bombyx mori] (0.0) |
| Best NR hit (blastx) | transport protein Sec61 alpha subunit [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0005784 Sec61 translocon complex GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation GO:0008565 protein transporter activity GO:0008219 cell death GO:0007391 dorsal closure GO:0042335 cuticle development GO:0008258 head involution GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity GO:0010507 negative regulation of autophagy GO:0007040 lysosome organization GO:0030968 endoplasmic reticulum unfolded protein response GO:0045169 fusome |
| InterPro families | IPR002208 SecY protein IPR019561 Translocon Sec61/SecY, plug domain IPR023201 SecY subunit domain |
| Orthology group | MCL10862 |
Nucleotide sequence:
ATGGGAATCAAATTCCTGGAAGTTATAAAACCGTTTTGCAGTATACTGCCAGAAATAGCG
AAACCGGAGAGAAAGATCCAATTCAGAGAAAAAGTATTATGGACAGCAATTACACTATTC
ATTTTCTTAGTATGCTGCCAGATTCCATTATTTGGTATAATGTCGTCAGACAGTGCGGAT
CCCTTCTATTGGATCCGTGTGATCTTGGCATCGAATCGAGGAACACTTATGGAGCTGGGT
ATTTCCCCCATCGTCACATCAGGACTGATCATGCAACTGCTAGCTGGAGCTAAGATTATA
GAAGTCGGTGACACTCCCAAAGATAGGGCCTTGTTTAATGGGGCGCAGAAACTATTCGGC
ATGGTGATAACAGTGGGACAGGCCATAGTGTATGTCATGACGGGAATGTACGGTGAACCT
AGTGAGATTGGTGCCGGAGTCTGTCTGCTCATCATCATACAGTTGTTTGTGGCCGGACTT
ATTGTACTGCTGCTCGATGAATTACTTCAGAAAGGTTATGGTCTTGGCTCCGGTATTTCC
CTCTTCATTGCCACCAACATTTGTGAAACAATCGTATGGAAGGCTTTCTCACCGGCTACC
GTCAACACTGGTCGCGGTACAGAGTTTGAAGGCGCAGTGATAGCATTATTCCACTTGCTG
GCCACTAGACCCGATAAAGTCCGAGCACTCAGAGAAGCCTTCTACCGTCAGAATCTACCA
AATTTGATGAACCTCCTAGCGACAGTCCTAGTGTTTGCTATCGTGATATACTTCCAGGGC
TTCAGAGTGGATCTCCCCATCAAGTCGGCTCGTTACCGCGGCCAGCACTCTTCGTACCCC
ATCAAACTGTTCTACACCTCAAACATTCCAATCATTCTTCAATCCGCCCTCGTCTCCAAT
CTGTATGTTATCTCTCAGATGTTAGCTGTGAAGTTCAGCGGCAACTTCCTGGTGAACTTA
CTTGGTGTGTGGGCAGACGTGGGCGGTGGTGGCCCCGCCCGCGCCTATCCCGTGGGCGGT
CTGTGCTACTACTTCAGCCCCCCGGAGTCGCTCGCCCACATCGCTCACGACCCGCTTCAC
GCCGTCATGTACATCATCTTCATGTTGGGCTCCTGCGCATTCTTCTCAAAGACATGGATC
GATGTTTCTGGATCATCAGCTAAGGATGTGGCGAAGCAACTTAAAGAACAACAGATGGTG
ATGAGGGGTCACAGAGACAACTCTATGATCCATGAGCTGAACCGTTACATACCCACAGCG
GCTGCCTTCGGCGGACTCTGTATCGGAGCCCTGTCGGTGTTGGCCGACTTCCTCGGAGCT
ATAGGATCTGGTACGGGTATACTCTTGGCTGTGACCATCATATACCAGTACTTTGAGATA
TTTGTTAAGGAGCAAGCCGAGATGGGTGGCATGAGCACCCTACTATTTTAA
Protein sequence:
MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
LFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDKVRALREAFYRQNLP
NLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQHSSYPIKLFYTSNIPIILQSALVSN
LYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYFSPPESLAHIAHDPLH
AVMYIIFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTA
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF