| New model in OGS2.0 | DPOGS214673 |
|---|---|
| Genomic Position | scaffold1015:+ 44734-51885 |
| See gene structure | |
| CDS Length | 1494 |
| Paired RNAseq reads | 1224 |
| Single RNAseq reads | 3732 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001947 (5e-55) |
| Best Drosophila hit | hepatocyte nuclear factor 4, isoform D (2e-132) |
| Best Human hit | hepatocyte nuclear factor 4-gamma (2e-122) |
| Best NR hit (blastp) | SXR-like nuclear receptor [Lymantria dispar] (0.0) |
| Best NR hit (blastx) | SXR-like nuclear receptor [Lymantria dispar] (0.0) |
| GeneOntology terms | GO:0005634 nucleus GO:0003700 sequence-specific DNA binding transcription factor activity GO:0004879 ligand-dependent nuclear receptor activity GO:0007492 endoderm development GO:0007498 mesoderm development GO:0008610 lipid biosynthetic process GO:0008270 zinc ion binding GO:0003707 steroid hormone receptor activity GO:0043565 sequence-specific DNA binding GO:0006355 regulation of transcription, DNA-dependent GO:0016042 lipid catabolic process GO:0034440 lipid oxidation |
| InterPro families | IPR000536 Nuclear hormone receptor, ligand-binding, core IPR001628 Zinc finger, nuclear hormone receptor-type IPR001723 Steroid hormone receptor IPR000003 Retinoid X receptor IPR008946 Nuclear hormone receptor, ligand-binding IPR013088 Zinc finger, NHR/GATA-type |
| Orthology group | MCL12664 |
Nucleotide sequence:
ATGCCAGTGCTCGGCGTCGGCATGGCTCAGGAAATCGGACTGCGCTACTGTCCCACTACT
GATTACATTCTACCGGGGGGGTACTGGGAGAAGAACTCCGTCCAGTATAACATGACCTAC
CACAGGCAGCACGACGATGCACAGTGTAACAACACAGTGTCATACAACACAGATAGTGAT
ATGCAGCTTGAAACGAGCAGTAGTGAGGCGAGTGCTAGCTCGACCGTGCTGTCCCAACAC
TGCGCTATATGTGGAGACCGAGCCACCGGCAAGCACTATGGAGCGTCCTCGTGCGACGGA
TGCAAGGGGTTCTTCAGACGTAGCGTCAGAAAAAACCATCTCTATACATGCAGGTTCAGC
AGGAATTGTGTAGTTGACAAGGACAAACGAAATCAGTGCAGATATTGCAGACTAAGGAAG
TGCTTTAAGGCCGGCATGAAGAAAGAGGCGGTCCAGAACGAACGTGATCGTATTAACTGC
AGACGGCCGTCTTACGAGGAGCCGGCTCAGGCGAACGGACTGTCAGTCGTGTCGCTGTTG
AACGCTGAACTACTCAGTAGGAAAGTCATTGACGAGACAAACAACGTAACAGACGCCGAG
ATAAACAACCGGAAGTTGGCTAAGATCAATGACGTGTGTGACTCCATCAAACAGCAACTA
CTCATTCTGGTGGAGTGGGCCAAGTACATACCCGCCTTCACGGAGCTGCACTTGGACGAT
CAGGTGGCGCTGCTGCGGGCCCACGCTGGCGAACACCTGCTGCTGGGTTGTGCTCGTCGG
TCGCTCCACCTGCGAGACGTGCTGCTCCTGGGAAACAACTGCATCATCACCAAACACCAT
CTCGACGGCAGAATGGATATAGACATCAGCATGATCGGCATGAGGGTGATGGATGAGATC
GTCAAACCGCTCCGGGAGATCGACATCGACGACACGGAGTTCGCCTGCCTTAAGGCCATC
GTCTTCTTCGATCCGAACGCCAAGGGTCTCTCTCAACCGCAGAAGATCAAGCAACTCCGT
TACCAGATCCAAATCAACCTGGAGGACTACATCAGCGACCGTCAATACGACGGGCGCGGG
CGGTTCGGCGAACTGCTGCTGTGTCTGCCGCCGCTGCAGAGCATCACCTGGCAGATGATC
GAGCAGATACAGTTCGCCAAACTGTTCGGAGTCGCGCACATCGACAGCCTGCTGCAGGAG
ATGCTGTTGGGAGGTAGGAAGACCCTAGAGGACGACTTACAACACACGCATAGAGCATTC
GGAGCATCAACAGAAGCGACGCTCGACGAGAGTTCAGCGGGCGGGGAGGGGACCGCGGGG
GTCGGGGGCGACTCGGCGGCCGCTGGGGTCGCGGGTGGACACGCCTCGCCACCACTCGTG
CCCCAACTGCCTCCCGGTGAACACGTGTTTGACGCGACCTTCAAACAGGAGCCCAACATG
AGTCCAGAACATACAGCCCGAGTACTGAAGACCTCGGATATAACACTGTTATAG
Protein sequence:
MPVLGVGMAQEIGLRYCPTTDYILPGGYWEKNSVQYNMTYHRQHDDAQCNNTVSYNTDSD
MQLETSSSEASASSTVLSQHCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCRFS
RNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRINCRRPSYEEPAQANGLSVVSLL
NAELLSRKVIDETNNVTDAEINNRKLAKINDVCDSIKQQLLILVEWAKYIPAFTELHLDD
QVALLRAHAGEHLLLGCARRSLHLRDVLLLGNNCIITKHHLDGRMDIDISMIGMRVMDEI
VKPLREIDIDDTEFACLKAIVFFDPNAKGLSQPQKIKQLRYQIQINLEDYISDRQYDGRG
RFGELLLCLPPLQSITWQMIEQIQFAKLFGVAHIDSLLQEMLLGGRKTLEDDLQHTHRAF
GASTEATLDESSAGGEGTAGVGGDSAAAGVAGGHASPPLVPQLPPGEHVFDATFKQEPNM
SPEHTARVLKTSDITLL