| New model in OGS2.0 | DPOGS207570 |
|---|---|
| Genomic Position | scaffold186:- 40776-108627 |
| See gene structure | |
| CDS Length | 1866 |
| Paired RNAseq reads | 1449 |
| Single RNAseq reads | 3810 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004733 (5e-109) |
| Best Drosophila hit | hephaestus, isoform H (4e-174) |
| Best Human hit | polypyrimidine tract-binding protein 2 (5e-137) |
| Best NR hit (blastp) | PREDICTED: similar to polypyrimidine tract binding protein [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC011728 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0007286 spermatid development GO:0008187 poly-pyrimidine tract binding GO:0003729 mRNA binding GO:0000398 nuclear mRNA splicing, via spliceosome GO:0007219 Notch signaling pathway GO:0008586 imaginal disc-derived wing vein morphogenesis GO:0008587 imaginal disc-derived wing margin morphogenesis GO:0005634 nucleus GO:0000166 nucleotide binding GO:0007319 negative regulation of oskar mRNA translation GO:0008103 oocyte microtubule cytoskeleton polarization GO:0003730 mRNA 3'-UTR binding GO:0000900 translation repressor activity, nucleic acid binding GO:0030529 ribonucleoprotein complex GO:0005737 cytoplasm |
| InterPro families | IPR006536 HnRNP-L/PTB/hephaestus splicing factor IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL10925 |
Nucleotide sequence:
ATGGTGTTTAGTTTACGTGAAATGCTATTTCGACTCCGATACACTCATGATGAACGTGGT
TGTGTCCATGACGAAAATGACGAGAGAGGCTCAGACGAGCTTCTTTCGCAGAGTGGCGTC
ACCGTCATGGCGCCCGCCGCTCCACACCATGCTGACAATAATAACCAAGATTCCGCCGCT
AAAAAGGTGAAGCTTGAACAAAATGTCGGCAAGCCTTCAAGAGTTATCCACATACGGAAT
ATACCAAATGAGACGACGGAAGCAGAGATCATACAGCTGGGTCTGCCATTTGGGAGGGTT
ACCAATGTTCTCGTGCTCAAAGGAAAAAATCAGGCCTGCGCCGGTGTATTTTGTACGCCG
GTCGGCCATGTTAAAATGCCAAAAGCAGGATTCTGCGGTGGTGAATTGCGCGCACATAGA
ATACGATGCACGCAAGCATTCCTGGAAATGGCGGAAGAAATATCTGCTGTAGCCATGGTG
GCATACTTCGGTGGCTGCGTGGCTCAACTTCGTGGGCGAGCTGTCTACGTGCAGTTCTCT
AACCATAAGGAACTAAAAACGGACCAGACTCACAGCAACGCGTCGGCGTCAGCACAAGCG
GCACTTCAAGCTGCTCAAGCCATATCTAACAGCGCTGGTGCAGCCCTTGTAGCTGGCGCG
GGCGCAGCACTACAACCAGCCAACGGAGGAACCGAAATACAATGTGACCTGCAGGGTGGC
CCCAACACTGTCCTGCGCGTTATAATAGAACATATGCTGTATCCGATAGTACTTGATGTA
CTTTACTCGATCTTCCAGCGATACGGAAAGGTGCTCAAAATTGTCACGTTCACTAAAAAC
AATTCATTTCAAGCCCTAATCCAGTACCCAGACACCGGGTCAGCGCAAATGGCGAAAACG
GCTCTGGATGGTCAGAACATATATAACGGATGCTGCACTCTCCGCATTGACTACTCAAAG
ATGACCTGCCTCAATGTCAAATATAACAATGATAAGTCCCGAGACTACACTAACCCGACG
CTTCCATCTGGAGACGGAGACGCTCATCAGCTGTTGACCAGTGAGTTGATGCCACTGCGG
GCCCACCTCGCCCTGAACCTCGCATCCAGGATGAGCGGAGGGGTATTGGCACCACCGTTC
CTGGGTCTGGGATCGGGGCTAGCTTCTCCCTATGGTGTGGGAGTGGGGGGAGTAAGCCTC
CCAGCGTTTGGGGCTCTCGCTTTGACTCCAGCATCACCAGCACTGCGAGCTTTAGCAGCT
CCACCACTACCGCTAGCTACAGTACTGCTGGTTTCAAATCTCAACGAGGAGATGGTCACG
CCTGACGCTCTATTTACCCTTTTCGGCGTGTACGGTGATGTGCAACGGGTGAAGATCCTC
TACAATAAAAAGGACTCAGCCCTCATCCAAATGGCAGAACCTCATCAGGCTCATCTAGCC
ATGACTCATATGGATAAGCTTCGGGTGTTCGGTAAAGCAATGCGCGTGATGCTCAGCAAG
CATCAGACCGTGCAACTGCCCAAAGAGGGACAGCCAGATGCAGGACTCACCCGGGACTAT
TCCCAGAGCCCACTCCATAGATTCAAGAAGCCTGGTAGCAAGAACTACCAGAACATTTAC
CCTCCGAGCGCTACATTACATTTATCCAACATTCCAGCTACCGTTACTGAAGATGACATC
AAGGAAGCGTTCACTAAACGAGGTTTCACCATCAAGGCGTTTAAATTCTTCCCGAAAGAC
CGCAAGATGGCTCTGGTCCAACTGCCATGCATCGACGACGCTGTGGCTGCCCTCATCAAG
ATGCACAACCACCAGCTCTCGGAGTCCAATCATCTAAGGGTCTCCTTCTCCAAATCAAGT
ATTTAA
Protein sequence:
MVFSLREMLFRLRYTHDERGCVHDENDERGSDELLSQSGVTVMAPAAPHHADNNNQDSAA
KKVKLEQNVGKPSRVIHIRNIPNETTEAEIIQLGLPFGRVTNVLVLKGKNQACAGVFCTP
VGHVKMPKAGFCGGELRAHRIRCTQAFLEMAEEISAVAMVAYFGGCVAQLRGRAVYVQFS
NHKELKTDQTHSNASASAQAALQAAQAISNSAGAALVAGAGAALQPANGGTEIQCDLQGG
PNTVLRVIIEHMLYPIVLDVLYSIFQRYGKVLKIVTFTKNNSFQALIQYPDTGSAQMAKT
ALDGQNIYNGCCTLRIDYSKMTCLNVKYNNDKSRDYTNPTLPSGDGDAHQLLTSELMPLR
AHLALNLASRMSGGVLAPPFLGLGSGLASPYGVGVGGVSLPAFGALALTPASPALRALAA
PPLPLATVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPHQAHLA
MTHMDKLRVFGKAMRVMLSKHQTVQLPKEGQPDAGLTRDYSQSPLHRFKKPGSKNYQNIY
PPSATLHLSNIPATVTEDDIKEAFTKRGFTIKAFKFFPKDRKMALVQLPCIDDAVAALIK
MHNHQLSESNHLRVSFSKSSI