New model in OGS2.0 | DPOGS216128  |
---|---|
Genomic Position | scaffold618:+ 38592-45179 |
See gene structure | |
CDS Length | 1656 |
Paired RNAseq reads   | 916 |
Single RNAseq reads   | 3228 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009535 (2e-154) |
Best Drosophila hit   | ND |
Best Human hit | zinc finger CCCH domain-containing protein 11A (4e-31) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC007327 [Tribolium castaneum] (2e-41) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC007327 [Tribolium castaneum] (6e-40) |
GeneOntology terms    | GO:0003676 nucleic acid binding GO:0005515 protein binding GO:0008270 zinc ion binding GO:0046872 metal ion binding |
InterPro families   | IPR000571 Zinc finger, CCCH-type |
Orthology group | MCL17163 |
Nucleotide sequence:
ATGAAAGTTCGCTTTCCGCCACATTTTATCGTAATCGCGACCCCGGACAAGCGAATAGCG
ATGGAGTCGCCTAGAAAATTTAACGATTGCTATTTTTATTATTACTCGACATGCACTAAG
GGAGACAATTGTATGTTTCGTCATGAGCCCTCTGCACTGGGTTGTGAGACAATGTGCACT
GCCTGGCAGCAAGGGAAGTGCTTGGACAAGTGCTGCAAACTAAGACACATGGAACTAAGG
AAAAACCGCAAGCAAATTCCTTGCTATTGGGAGAATCAGCCAGGCGGGTGTCAAAAGAAG
CATTGCCCCTTCATGCATAAGAATCCAGATGCGCGCTCTGATGGAATTGCACCGAGCCAG
CCTGCACCTGTTGTCAGTGCCCAAGTAGGCATTGAGACAGCCATAGAGGTGGGTGGTGGA
GTGCCAGCCTTACCCCCGCAAGCCCCTGCTCCAACACCAGTACCGCTATTATGGCAGCAA
CAGAGACAACAAGTGGTGCTAGATTCAGCGATCCTAGGTGTATTGCCCGGCAGCAGCGAG
TTTCCGAGGCGTGTTCACGCGCACGCACACGCGCACACACACACGCATGCTCACGCGCAC
GCACACGACACTACATACGTGCCCGTCGACCCGCTAGTCGTCAACTTCGAGGAAGAGTCG
GATAACGAAAGCGCCCCTTCCTGTACACCCACTAAGGTATCGGATGACGCACAGAAAATA
GCTAGGACCAAGTCACAGGAGTTGTTGCTCCTGGAGAAGATACAAGCTGAGGCCGCGGCC
TTCTACAGCTACGAGGCGCTGCCTGCGGAGCTGCCCAAGGAAAGGAAAATAGTCCGGGCG
AATCTCACCACCAAGTATGATAGGGTGTCACTAGACGAACTGTCAGGCAAGCAAACCACG
GAGCAGAGAAGCTCGCTAGACTTCAAAGTACTCTCGTTAGACGAGATTAGGGCGAGGAAG
AAAGTTTCAGAGGCTGTGATACACTCTGCACCTATAACGTTAAACCTAAGTAGGAAACGA
AAACTGTCCACTCACGAGACCATGACGACGTCAGGTAACAAAATAATCAAAGTAGTTAGG
AGCAACTCCATAGTTTATAAGAAGCTGGACAAGAATGCGCCCGCGCAGCCCGCACAGGCC
AGAGTGGACAACAAGAGATGTGAACAAAACGACAGCAGAAAGAGAACGCTGTCGGAACAG
AGCGATCTGTACGAGGTGGAGGACGAGCTGGAAGACAACTGTTACGAGTTTAAAAGAATT
AAAATAGCGGAACAGATACCCAGGCCGAAGTTAGTCAGGAATAGGGGAGCGGCTAAATGT
GTGAGTGACGTCACTGTAGTCATGGAACACGAAAACGGAAACGAGGATTCAGACGGTGAA
GTCCAGTTTGTGAGTTTAGAGTTGACAGATTGTAACACAGATATAGTCAGTAGTGTGAGG
GGCGAGGTCATCGATGTGGACTCGGCTAGGATGGGTGACCCCGTGGACATCGTGGACCTG
TGCGAGGAGCAGGATGACAGTGAGATGACAGCATCAGATCTAGGTTTAGTTAAAAACGTG
CCGGACGTCGTGGCCAGCTGCAGGAGGTCAATGAACGACAGTTCAGACAAAGACGTCATC
AGTAGTATAGATCAGCTGATCCATGATGACTTATGA
Protein sequence:
MKVRFPPHFIVIATPDKRIAMESPRKFNDCYFYYYSTCTKGDNCMFRHEPSALGCETMCT
AWQQGKCLDKCCKLRHMELRKNRKQIPCYWENQPGGCQKKHCPFMHKNPDARSDGIAPSQ
PAPVVSAQVGIETAIEVGGGVPALPPQAPAPTPVPLLWQQQRQQVVLDSAILGVLPGSSE
FPRRVHAHAHAHTHTHAHAHAHDTTYVPVDPLVVNFEEESDNESAPSCTPTKVSDDAQKI
ARTKSQELLLLEKIQAEAAAFYSYEALPAELPKERKIVRANLTTKYDRVSLDELSGKQTT
EQRSSLDFKVLSLDEIRARKKVSEAVIHSAPITLNLSRKRKLSTHETMTTSGNKIIKVVR
SNSIVYKKLDKNAPAQPAQARVDNKRCEQNDSRKRTLSEQSDLYEVEDELEDNCYEFKRI
KIAEQIPRPKLVRNRGAAKCVSDVTVVMEHENGNEDSDGEVQFVSLELTDCNTDIVSSVR
GEVIDVDSARMGDPVDIVDLCEEQDDSEMTASDLGLVKNVPDVVASCRRSMNDSSDKDVI
SSIDQLIHDDL