| Genomic Position | scaffold2467:+ 8053-42031 |
|---|---|
| See gene structure | |
| CDS Length | 1449 |
| Paired RNAseq reads | 10 |
| Single RNAseq reads | 76 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011957 (4e-29) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | endonuclease-reverse transcriptase [Bombyx mori] (5e-75) |
| Best NR hit (blastx) | endonuclease-reverse transcriptase [Bombyx mori] (6e-72) |
| GeneOntology terms | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
| InterPro families | IPR000477 Reverse transcriptase |
| Orthology group | MCL10020 |
Nucleotide sequence:
ATGCAGAGCGATAAGGATCAGAATGATTTGCACCCCGAGGAGAATGTTCTTGGAAGAGAC
GCTGCAAATAAAGTTACAGACATTGAGAACAACACTGTAGACAGGAACAAAGAACATACG
GCGAAAAATGTGAATGAATCGAATGAAAAAGGAAATAGCGTTTTAAGCAAATACGGCATC
ACATCTTATAAAAGACCGGAAATGTATGTGTCAAAGAAAGATAAACATTTTGATCCCGTC
AAAAGATATGTGCCCATAATTCATCTACAAGTGAACCAACCGACGTTAAGGGACTACGTT
CTTTACTCGATAGTTGGTAACTTCATCCGGGGCAACTTCACTCCGACCAGCTTCTCTGAG
AGACCTTGCAGGGACGAAGAGCCTCTCCCCTACTTCAAGCCTAAACACGCGAGAGCCGTG
CGTTCGAAGCACTCGAAGACCAAATGGCATGATGAAAGTGACAGTTATAGGACGAGGGGT
GACAGTGATTTCGATGGTTACTATTTTAGACCAAAATTTCTATCGCGAGTGGAGCGTTCG
ATTTACAAGTTCGGCAAAATGAGATACAGGTTCCTACCAGCAGCGATCGTGAGCGGACCA
TTGCGAGACAGGAGGTCCCTCACGTTGCAATGGTCTTTGAATGACGCTTCACATTTAGAG
AGAAAACAAACTAGTGTCGTCTTTAGATTACGTTATAGGAAAACAACGAGTGCCACCATA
TACCAAGTGTTCTTTACTAAAACTTTAAGATTAGGGTTGCTGCAAAGTGCTGGATGTAAA
CCGGATTCCCAGCCCCCGGTCAGTCAGGAGAGGTCGGAGCGCCACTGGGTTCTTTTAGTG
GGTATACCGGAAACCTATTTCTCAGGGAGTCCCACATACACCTCTCCGTCCCCTGAAAGG
GGATGCTACGGCTATAGACAACCTATTGGACAACCAATCAACCAGCCGAGAGCCAACCTG
ACCCGACACTTTACCAAGGATATCCCGGACATCACCCTGTCGGAGATTGAGATGGCCCTA
AAACAGCTAAAGAACAACAAGAAACCGGGTGAGGACGGAATTACTTCTGAACTTCTGAAA
GCGTGTGGATCACCGGTACTTAAAGTCCTTCAGAAGATCTTCAATTCTGTCTTGTTTGAA
GGTACCACGCCTGAGGCATGGAACAAGAGCGTAGTGGCGTTGTTCTTCAAAAAAGGTGAT
AACACCCTATTGAAGAGCTACACACCCATCTCGTTCTTGAGCCACGTTTACAAACTGTTT
TCTAGGGTCATTGTAAATCATCTCGAACGCAGGTTTGATGACTTCCAGCCTTCCGAACAA
GCCGGGTTCCGAAAAGGCTATAGTACCGTAGACCACATACATACGTTGCGCCAGGTTATA
CAGAAGACTGAGAAGTATAACTTGCCGCTCTGTCTAGCGTTTCTGGACCACGAAAAAGCC
TTTGATTAG
Protein sequence:
MQSDKDQNDLHPEENVLGRDAANKVTDIENNTVDRNKEHTAKNVNESNEKGNSVLSKYGI
TSYKRPEMYVSKKDKHFDPVKRYVPIIHLQVNQPTLRDYVLYSIVGNFIRGNFTPTSFSE
RPCRDEEPLPYFKPKHARAVRSKHSKTKWHDESDSYRTRGDSDFDGYYFRPKFLSRVERS
IYKFGKMRYRFLPAAIVSGPLRDRRSLTLQWSLNDASHLERKQTSVVFRLRYRKTTSATI
YQVFFTKTLRLGLLQSAGCKPDSQPPVSQERSERHWVLLVGIPETYFSGSPTYTSPSPER
GCYGYRQPIGQPINQPRANLTRHFTKDIPDITLSEIEMALKQLKNNKKPGEDGITSELLK
ACGSPVLKVLQKIFNSVLFEGTTPEAWNKSVVALFFKKGDNTLLKSYTPISFLSHVYKLF
SRVIVNHLERRFDDFQPSEQAGFRKGYSTVDHIHTLRQVIQKTEKYNLPLCLAFLDHEKA
FD