New model in OGS2.0 | DPOGS204481  |
---|---|
Genomic Position | scaffold10037:- 1537-2784 |
See gene structure | |
CDS Length | 942 |
Paired RNAseq reads   | 465 |
Single RNAseq reads   | 1411 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA007824 (8e-140) |
Best Drosophila hit   | sucb, isoform A (6e-102) |
Best Human hit | succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform 2 precursor (2e-96) |
Best NR hit (blastp)   | succinyl-coa synthetase beta chain [Aedes aegypti] (3e-116) |
Best NR hit (blastx)   | PREDICTED: similar to succinyl-coa synthetase beta chain [Tribolium castaneum] (4e-109) |
GeneOntology terms    | GO:0045244 succinate-CoA ligase complex (GDP-forming) GO:0004776 succinate-CoA ligase (GDP-forming) activity GO:0006099 tricarboxylic acid cycle GO:0005524 ATP binding GO:0005811 lipid particle |
InterPro families    | IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site IPR016102 Succinyl-CoA synthetase-like IPR005809 Succinyl-CoA synthetase, beta subunit IPR013816 ATP-grasp fold, subdomain 2 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type IPR005811 ATP-citrate lyase/succinyl-CoA ligase |
Orthology group | MCL15652 |
Nucleotide sequence:
ATGATTGGACATAAACTTATCACAAAACAAACGCCTAAAGACGGCATATTGGTGGATAAA
GTAATGATAGCAGAAAGTGTTAACATAAAGAGGGAAACATACTTGAGTATAGTGTTAGAA
AGAGCATATAATGGTGCAGCTTTAGTAGCATCTCCAGCGGGAGGAATGGATATTGAAGCG
GTGGCTGAAAAAACTCCTCATTTAATAAAAACTGTTCCCATCGACATATATGAGGGCATA
ACAGATAAAACTGCTAGAGAAGTTGCCGAGTTTCTAGAATTTAAAGGGCCTCTACTTAAT
AAATGTGCTGATGAAATTAAAAAGTTATGGCAGCTATTTTTAAAGGTAGATGCTACACAA
CTAGAAATTAATCCTCTAGTTGAAACTGATGATGGTAAAGTTGTAGCTGTTGACGCAAAG
ATCAATTTTGATGACAATGCTGAGTTTAGGCAGAAGGAAATCTTTGCACTTGATGACAAG
TCTGAGACAGATCCTAGAGAGAGAGAGGCAGAGGCTCATAATCTTACATACATTGATATG
GATGGTAGTATTGGTTGCATGGTCAATGGAGCCGGCCTGGCTATGGCCACAATGGATCTT
ATTGTGTTGAGTGGTGGGAGACCAGCTAATTTCTTGGATCTTGGAGGTGGTGTGGGACAA
GCACAAGTTTCGACTGCTTTGAAGATACTGGAATCAGATCCTAAAGTAAAGGCAATATTT
GTAAATGTGTTTGCTGGTATCGTAAATTGTGCTATGGTTGCAAAAGGTATTGTTGCTGTA
TGCAAAGAAAATCTACCAAAGCATCCAATAGTGATTCGTTTGGAAGGAACAAACGCATCT
ATAGCCAAAAAAATCCTGGAAGAATCTGGCCTGCCTTTGCACATAGTAAATGATGCTGAT
GAAGCAGCAAAAAAAGCTGTTGCATTGGCGGAATCAAAATAA
Protein sequence:
MIGHKLITKQTPKDGILVDKVMIAESVNIKRETYLSIVLERAYNGAALVASPAGGMDIEA
VAEKTPHLIKTVPIDIYEGITDKTAREVAEFLEFKGPLLNKCADEIKKLWQLFLKVDATQ
LEINPLVETDDGKVVAVDAKINFDDNAEFRQKEIFALDDKSETDPREREAEAHNLTYIDM
DGSIGCMVNGAGLAMATMDLIVLSGGRPANFLDLGGGVGQAQVSTALKILESDPKVKAIF
VNVFAGIVNCAMVAKGIVAVCKENLPKHPIVIRLEGTNASIAKKILEESGLPLHIVNDAD
EAAKKAVALAESK