| New model in OGS2.0 | DPOGS205919 |
|---|---|
| Genomic Position | scaffold1853:- 19091-22586 |
| See gene structure | |
| CDS Length | 1053 |
| Paired RNAseq reads | 960 |
| Single RNAseq reads | 3897 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007082 (0.0) |
| Best Drosophila hit | U2 small nuclear riboprotein auxiliary factor 50 (4e-157) |
| Best Human hit | splicing factor U2AF 65 kDa subunit isoform b (1e-136) |
| Best NR hit (blastp) | U2 small nuclear ribonucleoprotein auxiliary factor 2 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | U2 small nuclear ribonucleoprotein auxiliary factor 2 [Bombyx mori] (6e-175) |
| GeneOntology terms | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005686 U2 snRNP GO:0008187 poly-pyrimidine tract binding GO:0005681 spliceosomal complex GO:0000245 spliceosome assembly GO:0005634 nucleus GO:0046982 protein heterodimerization activity GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0051168 nuclear export GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0007052 mitotic spindle organization GO:0071011 precatalytic spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL14185 |
Nucleotide sequence:
ATGCAGGCAGCAGGCCAAATCCCGGCAAACATAGTAGCAGATACACCACAGGCTGCTGTG
CCAGTAGTAGGGTCCACAATAACTAGACAAGCAAGAAGATTATATGTAGGGAACATACCA
TTTGGTGTCACAGAAGAGGAAACAATGGAGTTCTTTAATCAGCAAATGCATCTTTCTGGT
TTGGCTCAAGCTGCGGGCAACCCTGTTTTAGCGTGTCAGATAAACTTAGATAAAAACTTT
GCATTCCTTGAGTTTAGATCTATTGATGAGACTACACAGGCCATGGCATTTGATGGCATT
AATTTTAAGGGTCAAAGTTTGAAAATAAGGCGACCTCATGACTATCAACCAATGCCAGGA
ACCGAAAACCCAGCAATCAATGTACCTGCTGGTGTTATCAGTACTGTAGTTCCAGATTCA
CCCCATAAAATCTTTATTGGAGGTCTTCCTAACTATCTTAATGAAGATCAAGTGAAAGAA
CTTCTGATGTCATTTGGTCAGCTGCGAGCTTTCAACTTGGTGAAGGATTCTTCGACGGGC
CTAAGCAAGGGTTATGCCTTTGCTGAATATGTTGACATTTCTATGACTGATCAGGCTATC
GCTGGTTTGAATGGCATGCAGCTGGGTGACAAGAAACTCATTGTCCAACGGGCAAGCATT
GGAGCAAAGAACTCGACATTAGCTATGACAGGGGCTGCTCCGGTGACTCTTCAAGTGGCA
GGGCTGACATTGGCTGGTGCAGGCCCTGCCACAGAGGTACTCTGCCTCCTGAACATGGTT
ACACCGGATGAGCTTCGAGACGAAGAGGAGTATGAAGACATTTTGGAAGATATCAAAGAG
GAATGCAACAAATATGGGTGTGTGCGTAGTATAGAAATTCCAAGGCCTATTGAAGGCGTC
GAAGTGCCTGGTTGTGGAAAGGTATTTGTCGAATTTAACAGCATCGCAGATTGCCAGAAA
GCTCAACAAACATTGACAGGCAGAAAATTCAGCAACCGCGTCGTAGTTACCTCTTACTTC
GACCCCGACAAATATCACCGCAGAGAGTTTTAA
Protein sequence:
MQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSG
LAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPMPG
TENPAINVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTG
LSKGYAFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGAKNSTLAMTGAAPVTLQVA
GLTLAGAGPATEVLCLLNMVTPDELRDEEEYEDILEDIKEECNKYGCVRSIEIPRPIEGV
EVPGCGKVFVEFNSIADCQKAQQTLTGRKFSNRVVVTSYFDPDKYHRREF