New model in OGS2.0 | DPOGS209827  |
---|---|
Genomic Position | scaffold830:+ 50879-51442 |
See gene structure | |
CDS Length | 564 |
Paired RNAseq reads   | 1145 |
Single RNAseq reads   | 2830 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008050 (4e-89) |
Best Drosophila hit   | Chd64 (7e-68) |
Best Human hit | transgelin-2 (4e-27) |
Best NR hit (blastp)   | transgelin [Bombyx mori] (9e-77) |
Best NR hit (blastx)   | transgelin [Bombyx mori] (1e-74) |
GeneOntology terms    | GO:0005865 striated muscle thin filament GO:0006939 smooth muscle contraction GO:0003779 actin binding |
InterPro families    | IPR001715 Calponin homology domain IPR003096 Smooth muscle protein/calponin |
Orthology group | MCL11022 |
Nucleotide sequence:
ATGGCTGAATACCGCGCAGGGAAAGCAGGCATCAACGCTGAGGCTCAGGAGAGGATAAAC
AGTAAATACAACAATGACATAGCCCATGAGACGTTAGAGTGGATCAAGAAAATCACCGGG
GAACCGGAGAACACGTCCGGTGATGCGGAGAATCTTTACGAGGTGCTCAAAGATGGTACC
TTACTTTGTAATCTAGTTAACAAATTCCAAGAAGGCGCCGTCAAAAAAATTAATAAATCC
AACATGGCTTTCAAGTGTATGGAGAATATCAACGCTTTTCTTGAAGCCGTCGTCAAGTTG
GGAGTTCCATCCCAAGAGACATTCCAGACGATCGATCTATGGGAGAAGCAGAACCTTTAC
TCTGTAGTTGTATGCCTGCAATCATTAGGCAGGAAAGCTGGAAATTTCGGTCTACCGTCC
ATGGGACCAAAGGAAGCAGAGAAAAATATAAGAGAGTTCAGTGAAGAACAACTACGAGCT
GGTCAGAATGTAGTTTCCTTGCAGTACGGAACCAACAAAGGACAACAATCCGGCATCTCG
TTCGGTAACAGGCGTCAGATGTGA
Protein sequence:
MAEYRAGKAGINAEAQERINSKYNNDIAHETLEWIKKITGEPENTSGDAENLYEVLKDGT
LLCNLVNKFQEGAVKKINKSNMAFKCMENINAFLEAVVKLGVPSQETFQTIDLWEKQNLY
SVVVCLQSLGRKAGNFGLPSMGPKEAEKNIREFSEEQLRAGQNVVSLQYGTNKGQQSGIS
FGNRRQM