| New model in OGS2.0 | DPOGS206643 |
|---|---|
| Genomic Position | scaffold174:- 145018-146968 |
| See gene structure | |
| CDS Length | 954 |
| Paired RNAseq reads | 79 |
| Single RNAseq reads | 362 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008341 (2e-48) |
| Best Drosophila hit | CG3021 (1e-63) |
| Best Human hit | mitochondrial tRNA-specific 2-thiouridylase 1 (3e-68) |
| Best NR hit (blastp) | PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tribolium castaneum] (8e-90) |
| Best NR hit (blastx) | PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tribolium castaneum] (1e-88) |
| GeneOntology terms | GO:0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity GO:0005524 ATP binding GO:0016740 transferase activity GO:0006399 tRNA metabolic process GO:0008033 tRNA processing GO:0005737 cytoplasm GO:0000166 nucleotide binding GO:0005739 mitochondrion GO:0000049 tRNA binding |
| InterPro families | IPR004506 tRNA-specific 2-thiouridylase IPR014729 Rossmann-like alpha/beta/alpha sandwich fold |
| Orthology group | MCL12273 |
Nucleotide sequence:
ATGTTTAAGAAAATAGCTGTAGGCATTTCAGGCGGTGTTGATAGTTCAGTCGCTGCTTTA
TTACTGAAAAGAGCAAATTATAAAGTGGAAGGAGTATTCATGCGAAATTGGGATAGCAAT
TACGAAGTTGGAAGCTGTTCTGATGAAAAAGACTTTGAAGATGCGTCATTCGTGTGCCGT
AAGCTTGATATTCCTTTGCATAGAGTTCACTTCATAAAAGAATATTGGAATGATGTCTTC
ACAGTTCTTCTTAAGGAATATGAAACTGGTTTAACACCAAACCCAGATATACTGTGCAAC
AGATACATTAAATTTGATAGTTTCTTTGAACATTGCAGGAATAATTTAGAGGTTGATGCT
ATAGCAACTGGTCATTATGCTAATACATCATTTGGACCTTTCTTAGAGAATTATTTGGAA
AATGAAGGTGTTAAATTGCTCCGTCCAGTAGATAAACACAAAGATCAAACATTTTTCCTG
TCACAAGTTAAGCAATTCTCACTAAGGAAATGTATGTTCCCAATAGCGAATCTAATGAAA
AGTGAAGTCAGAGACCTAGCAAGGAAAGAAGGTTTATTGCCAGTCGCCGACAAAAAAGAT
AGCACTGGTATTTGTTTTATTGGAAAAAGAAGATTTAAAGACTTTATTGATGATGTATCT
GGTACTAGCCATCCAGCACTGTGGAACAACATCTGTATATCTGACAAACCTCATTGGATA
AATGAAGTACCTGAGGAACTAAATGATAACAATGTACTGAATTGTACATTCAGATTTCAA
CATACCAAACCTCTAGAACCTTGTAGGATAGTAAATAATCCTGAAGGATTGACTATTATA
TTAAATAACAGTCTAAGAGCCCTGACAGAGGGCCAGTTTGCTTGTTTCTACAGAGGTGAT
GAATGCCTCGGAAGTGCTAAAATAAAACATGTTTGTCATAATCTAGTGTACTAA
Protein sequence:
MFKKIAVGISGGVDSSVAALLLKRANYKVEGVFMRNWDSNYEVGSCSDEKDFEDASFVCR
KLDIPLHRVHFIKEYWNDVFTVLLKEYETGLTPNPDILCNRYIKFDSFFEHCRNNLEVDA
IATGHYANTSFGPFLENYLENEGVKLLRPVDKHKDQTFFLSQVKQFSLRKCMFPIANLMK
SEVRDLARKEGLLPVADKKDSTGICFIGKRRFKDFIDDVSGTSHPALWNNICISDKPHWI
NEVPEELNDNNVLNCTFRFQHTKPLEPCRIVNNPEGLTIILNNSLRALTEGQFACFYRGD
ECLGSAKIKHVCHNLVY