| New model in OGS2.0 | DPOGS201538 |
|---|---|
| Genomic Position | scaffold931:- 31439-36909 |
| See gene structure | |
| CDS Length | 792 |
| Paired RNAseq reads | 715 |
| Single RNAseq reads | 3041 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002714 (2e-52) |
| Best Drosophila hit | syndecan, isoform E (2e-31) |
| Best Human hit | syndecan-1 precursor (8e-13) |
| Best NR hit (blastp) | GK20743 [Drosophila willistoni] (9e-36) |
| Best NR hit (blastx) | GK20743 [Drosophila willistoni] (2e-33) |
| GeneOntology terms | GO:0005886 plasma membrane GO:0005576 extracellular region GO:0005925 focal adhesion GO:0004888 transmembrane receptor activity GO:0008092 cytoskeletal protein binding GO:0007411 axon guidance GO:0050908 detection of light stimulus involved in visual perception GO:0008045 motor axon guidance |
| InterPro families | IPR001050 Syndecan IPR003585 Neurexin/syndecan/glycophorin C |
| Orthology group | MCL13249 |
Nucleotide sequence:
ATGATACACCTCGAAAGCGGCACCAACAATTTCAGTTCGTGTAGATTAAACATCGGCGTC
GAGACGACTAGTGTTCCTGTGACCGAAGGGACCATCCAGCAGCGGGACGAGCCGCTCGCT
TCGGACAAGGATCTCTTCATCGACGATGACGGCTCGGGCCTAGAGATAGACGAGAGCTCC
GGCTCCGGCTGGGGGCCCGGCCCCGGACCCGACGACGAAGACGGCCGCGGCTCAGGTGAC
GCCCCCCATCCCGGGGCCCCCGAGGATGACGAGGACTTCACCCCGCGGAGAATCACCACC
ACCCTACCGCCGGTCCCAGAGACCGAGCCCTCAGACACTGACAGACCCATCCCAGTAGAC
TCGTTCGATGTAGTCGGTCCGCGTGTATTGTCCAAGCCTTCGGAAGGTGCTCCAGATATA
CGCCCCGAGGAGCCCCAGCGACCTGATCAAACCGACATCAGCATATCTGGTGAAGATATC
AACCCGAATATTGACCAAGATCAATCTAGTTCGAACGTGGAGCCGGAGTCCCGTCCTTCT
GACAACAGCGTCTTCATCATGAACGCCAAACCTGAAGACCGCGCCACCAGCTTCTTCGCC
CAACCTGGCATACTGGCCGCTGTGATCGGAGGGGCGGTAGTGGGGCTGTTATGCGCCATC
CTAGTGGTCATGTTCATCGTGTACAGGATGCGGAAGAAGGACGAGGGCTCGTACGCCCTG
GACGAACCGAAGCGAAGCCCGGCCGCCGCCTCTTACGGGAAAGGTCACAACAACCGGGAG
TTCTACGCGTGA
Protein sequence:
MIHLESGTNNFSSCRLNIGVETTSVPVTEGTIQQRDEPLASDKDLFIDDDGSGLEIDESS
GSGWGPGPGPDDEDGRGSGDAPHPGAPEDDEDFTPRRITTTLPPVPETEPSDTDRPIPVD
SFDVVGPRVLSKPSEGAPDIRPEEPQRPDQTDISISGEDINPNIDQDQSSSNVEPESRPS
DNSVFIMNAKPEDRATSFFAQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYAL
DEPKRSPAAASYGKGHNNREFYA