| New model in OGS2.0 | DPOGS215274 |
|---|---|
| Genomic Position | scaffold1964:- 9775-15442 |
| See gene structure | |
| CDS Length | 2586 |
| Paired RNAseq reads | 51 |
| Single RNAseq reads | 153 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008840 (0.0) |
| Best Drosophila hit | toll, isoform A (4e-18) |
| Best Human hit | toll-like receptor 4 precursor (1e-17) |
| Best NR hit (blastp) | PREDICTED: similar to toll-like receptor 13 [Tribolium castaneum] (2e-143) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC006154 [Tribolium castaneum] (3e-128) |
| GeneOntology terms | GO:0001875 lipopolysaccharide receptor activity GO:0032497 detection of lipopolysaccharide GO:0046696 lipopolysaccharide receptor complex |
| InterPro families | IPR000157 Toll-Interleukin receptor IPR001611 Leucine-rich repeat IPR003591 Leucine-rich repeat, typical subtype |
| Orthology group | MCL17692 |
Nucleotide sequence:
ATGTTGTTAGTTTGCCGACTCTGCATAGTTTTATATTGTTTGCAATACACTAATTGTAAT
ATTCTTGATCTGGAGTACGAGGAGATCGCTCATAATATCCTCTTCCCTCCTACGGACAGG
AGTGCTGATGCCCTCCCCGTGAATATAGGGAGAGACAAAGTATCTGGTTGTATTTGTAGA
GGCACGAAGAACAGCGAACTCATCGTCTGCTTTGGGAACTACGAATGCAAGAGATTTCCT
CAGGTAAAAGTAAGAAGCAGACATCTTATAGTTAGAACGACGGTTCTACCAGAAATACGT
GTAGGAGACCTGGACTCCTTATATTATTTGACGAGCTTGAAAATAGAATCGAACCATAAA
CTCAAATACTTACAACCTAGAATATTTCGTAACCTCACCAAATTGAGAGATCTCTCGATA
TCATACAACACAGATCTTCGTGTTATACTGAACAGCGTATTCGAGGGACTGATCAGCCTT
CGAGAGTTGAAGTTAGTTAATAACGGGTTCACAAATATATTTGCTATAACCTCCGCCCTC
AAGCCCGCCATGTTGCCATCCTTGAAGAAATTGGATTTGTCAGAAAATTCACTGGAGAAA
ATTCCTGAAAAAGCGTTCAAACCGATGGTTGGTTCGACTTTGGAAACGCTTTGTATTAGT
CTTTGTCGCATCGATTTCATTCATCCAGATAGTTTTATACCACTGAAAATGTTACAAGAT
CTCAGTATTGGAGAAAATGACTTAAATTCCTCTATCATAAATGACTTTCTAGTCAAGCTT
CAGAAGCATGGCATTAATCTGAGGCACCTAGACTTATCCGGTATTGGATTCAGAAAGCAT
CCTCCGAAAAAACTATTAGAAACTATAGCAAACACGACAATAGAACGGCTCACACTAGCT
GATAATCAATTTGAAATAATCGCAGATGATACATTCCCTAAAATGAAAAACATTAAGGTA
CTGGACCTTAGAAGAGTCAGTGCGATATCTATGGGACCTAAGGCTTTCGAACCATTAAAA
TTCCCGAGTCTAAGAATATTATTGCTCAGCGGTAATCACTTACCAGGTATACACCTCAAA
CATATAGCAAACCAGCAAATCTTGTTGATGGATCTATCGTCTAATAAAGGCACGGCGTCA
AGTCCTTTCTATTATGAAATCGATAGAGGCGCTTTCGAACACTCTGGACACTTGAGAATT
CTCAATCTAGCTTTTAATAGAATGAAGTCTATATTTGATTACACGTTTACTGGATTGGGA
AGACTCAAAATGCTTAACTTAGAGAACGGCACCATTTTCCACATCGGGAATGGAACCTTC
AAGCCATTGAAGAATTTAGAGATACTTAATCTTGCGAATAATCCGTTGGCGGCGAATGAG
AATTTAACGAGTGCCATGTTTGATGGATTGAACATGCTTAAAATATTAATACTTAAAAAC
TGTGGAATTAAATATTTTTATGAGGATGATAACATATTCGAGACGATGCCGAACCTCACC
CATTTAATATTAAGGAACAACGAATTGTATTTCATCACGAGTGAACTATTCAAGCCATTA
AAAAAGTTGCAGGAACTAGATCTAAGTGATAATTTAATATTATCTTGGTGGAGACCTGTA
TTTTATACGTCCGGAATAAGACCGCACAGCGTTTTTTTAGCAGACAATAAAATTTCTCAC
TTCACTCTGAATATGATGAAGGACATAAATTACTTGTTGGAAAATAAAGGAAACTTCACG
GTTGAAATAGATTTGATGGACAATGTTTTCATCTGTGACTGCCCTTCGATGTACAATACT
TACACGTGGTTACAAGTGAACGGTTCTGAGGAACTCAAAATATATTTCGCCCAATCTACT
TTCCTCTGCAGCAGCCCTGACGTGTGGGAAGACAGGAGGGTTGCAGACTATTTGCTCAGC
ATAAAAACTCTTAATTGTCTGATGTTTGATAAGTTCTCCAACTTAATGCTGATGGTGTGG
ACCGCCCCCTCGATAATTATGCTCATCATAGTATTACTAATAGTAGCCGTTGCATGTAAA
TATAGACTTTACATTAGATATTGGTTATTTTTAGCTAAAATTGCGTTAGGAAGAAAATTT
ATTAGAAAGTCTTTAAAGAATGGTGACGTTTTAGAACGAGCCGATTACAAATATGACGCC
TTCGTATCCTACTGTAACGAAGACAGAGAATTCGTCGCCGAAATGATAACTCAGCTGGAA
TGTACTCCGCCCTATCTAAAACTGTGCATTTACGAGCGAGACTTCGAGATCGGTTCCTTT
ATATCAGAATCTATATTAGGCAGTATAAATGTGAGTAGATACATCATACTGATAATAAGT
AATCATTTTGCTAAATCTCAGTGGTGTCGATGGGAGACTCAATTGGCCGAGTATCACAGA
TTGTTTCTGGAAGACGGCACTTCCTACGATCCGCTGGTGCTTATAAGAATAGGTGACGTG
GAGAACAAATACTTAACGACGACCTTGAAATTTTTAATGAAAACTAAGATTTACATAACC
TGGGGCGATCAACAACCCAACGAATTCTGGAAGAAACTCAGAAACGTTATTTGTAAATAT
AAATGA
Protein sequence:
MLLVCRLCIVLYCLQYTNCNILDLEYEEIAHNILFPPTDRSADALPVNIGRDKVSGCICR
GTKNSELIVCFGNYECKRFPQVKVRSRHLIVRTTVLPEIRVGDLDSLYYLTSLKIESNHK
LKYLQPRIFRNLTKLRDLSISYNTDLRVILNSVFEGLISLRELKLVNNGFTNIFAITSAL
KPAMLPSLKKLDLSENSLEKIPEKAFKPMVGSTLETLCISLCRIDFIHPDSFIPLKMLQD
LSIGENDLNSSIINDFLVKLQKHGINLRHLDLSGIGFRKHPPKKLLETIANTTIERLTLA
DNQFEIIADDTFPKMKNIKVLDLRRVSAISMGPKAFEPLKFPSLRILLLSGNHLPGIHLK
HIANQQILLMDLSSNKGTASSPFYYEIDRGAFEHSGHLRILNLAFNRMKSIFDYTFTGLG
RLKMLNLENGTIFHIGNGTFKPLKNLEILNLANNPLAANENLTSAMFDGLNMLKILILKN
CGIKYFYEDDNIFETMPNLTHLILRNNELYFITSELFKPLKKLQELDLSDNLILSWWRPV
FYTSGIRPHSVFLADNKISHFTLNMMKDINYLLENKGNFTVEIDLMDNVFICDCPSMYNT
YTWLQVNGSEELKIYFAQSTFLCSSPDVWEDRRVADYLLSIKTLNCLMFDKFSNLMLMVW
TAPSIIMLIIVLLIVAVACKYRLYIRYWLFLAKIALGRKFIRKSLKNGDVLERADYKYDA
FVSYCNEDREFVAEMITQLECTPPYLKLCIYERDFEIGSFISESILGSINVSRYIILIIS
NHFAKSQWCRWETQLAEYHRLFLEDGTSYDPLVLIRIGDVENKYLTTTLKFLMKTKIYIT
WGDQQPNEFWKKLRNVICKYK