| New model in OGS2.0 | DPOGS205980 |
|---|---|
| Genomic Position | scaffold970:+ 18566-27961 |
| See gene structure | |
| CDS Length | 2073 |
| Paired RNAseq reads | 2539 |
| Single RNAseq reads | 7747 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009409 (6e-29) |
| Best Drosophila hit | CG7185 (1e-46) |
| Best Human hit | cleavage and polyadenylation specificity factor subunit 6 (2e-34) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC008014 [Tribolium castaneum] (1e-92) |
| Best NR hit (blastx) | PREDICTED: similar to CG7185-PA [Apis mellifera] (5e-56) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0006379 mRNA cleavage GO:0005849 mRNA cleavage factor complex GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL40419 |
Nucleotide sequence:
ATGGCGGATGGAGGCGTGGATATAGATTTATACGCTGATGATATTGAATCTGATTTTAAT
AGACAGGATGACTTTGGAGGAGAAAATGTCGACTTGTACGACGACGTAATAGCGGCGCCA
ACAGTGAAAACCGAGGATGGAGATGGGCCACCGAACTCATCAGCCGCTCCGCACTCCCAT
CCTCCTGAGGAGACAAACGGTTCCGTTCCTTACCACAACAACGCACCCAGTCACGGACAT
CATGGCCGCCGTTTTCAACTTTACGTCGGCAACCTCACTTGGTGGGCTACAGATCAAGAC
ATAGCTAACGCGATCGCTGATATCGGGGTCACGGATTTTCAAGATGTCAAGTTCTTCGAG
AACAGGGCGAATGGGCAGTCGAAGGGATTCTGCGTCGTTTCTCTGGGATCCGACCAGTCC
ATCAGAATGGTCATGGATCGACTACCCAAGAAGGAGATACATGGGCAGCACCCAGTAGTC
ACGCTACCCACCAAACAGGCTTTAAACCAGTTTGAAAGTCAATCTAAGACGCGATCGACC
CCGCCGGGTCCTAATCCTGGGATGAGGGGAGGACCTCACGGTCCAGGAGGACCGCCTGGA
CCCCATCCAGGAGAGTTTTTCGGTGGAGGCCCTAACGGTCCGGGTCCGAACGGGCCACGG
ATGATGATGCCAGGCCCGGGTCCGCATCACCAGCTGCGAGGTCCGCCGCCAGGGCCTCAT
GGCCCTCCGCCGCACCACATGCCACAACACCAGGGCCCCCCGCCGCATCACATGCCTCCA
CATCAAGGCCCCCCACCACATCAAGGGCCCCCGCAGCATAGGCCACCGATGCAGTTCCAG
GGTCCGCCTCAAATGCAGCGTACGGGTCCAGGAGGTCCCGGTCCGGGCGGTCCCGGCCCC
GGGCCTGGTCCTCGTGGTCCTGAATGGCCTCGTCACTTACCGCCCGCGCCACAGTACGGA
CCCCCGCAGCATCAAATGCCGCATCAGATGCCTCCACCTCATGCCGGCCTGCCTCCGCCG
CATCATCAGCTGCCGCCTCATCAGCAAGGCCCGCCCCGCGGACCGGCGCCATTACCGCAA
CACCCAGGTGTGGGCGGAGCGCCGGCTCCTCATGTGAACCCGGCCTTCTTCAGTCAACAG
CCTCCAGTACAACCCGCCCCCGCTGTACAGCCGCCGCAGCCCGCCCCGCCAGGACCGGGA
GGACCCTACGGCCACCCAGCGCACGCGCCCCCGCCCACACAGGGACCCCCGCCAGGCGCC
AGGCAGCCTTATGGAAGACCTCCAGCCAACTATCCCCCTACAGACGGTCGAGCTGCACAC
CACGCGGCGCCGCTGGGGGTCCCACACGCGCACGCTGCCCTAGCGCCGCACGTCCCCCAC
GCTCCCATCAGCGAGGCGGAGTTCGAGGAGGTGATGAGCAGGAACAGGACCGTTTCCTCG
AGCGCCATCGCCAGGGCTGTGAGCGACGCGGCCGCCGGGGAGTACGCCTCCGCCATAGAG
ACGCTCGTCACCGCCATATCCCTCATAAAGCAGAGCAAGGTGGCCCACGACGATCGATGC
AAAATATTAATATCGTCTCTACAAGACACTCTACACGGTGTAGAGACTAAGTCGTACGGC
GGCGAACGAAGACGATCGCGCTCTAGGGAGAGAGATGCTAGAGCTCATCACAGAGCCCCG
AGACGAAGGGAACGATCGGCTTCCAGATACCGGGATAGATCAAGGGATAGAGACGACAGG
GATCGGTACAGGGAAAGGTCGAGGGAACGCGACCGTGAGCGCGACCGAGACGCGTACTAC
AGGGACTATCGCGAGAGGGAAAGGGACAGGTCTAGGTCGAGGGACAGAGAACGCACGGAT
CATTATAATAGAGGACACAGTCGCGAGGAAAGGCCACGTAAGTCGCCTGTAGAAGCGGCG
GCGGAGGGAGGCGCCGGGGACGCGGCGGCCAAGGGTCGGGCGGCGGCGCCCTACTACGAC
GAGAGGTACCGCGAGAGACGGGACCGCGAGCCCCCGCCGGCAGACAGAGACCGCGACCGG
GACCGCGACCATCGCCGGGACGCCAGGCACTAG
Protein sequence:
MADGGVDIDLYADDIESDFNRQDDFGGENVDLYDDVIAAPTVKTEDGDGPPNSSAAPHSH
PPEETNGSVPYHNNAPSHGHHGRRFQLYVGNLTWWATDQDIANAIADIGVTDFQDVKFFE
NRANGQSKGFCVVSLGSDQSIRMVMDRLPKKEIHGQHPVVTLPTKQALNQFESQSKTRST
PPGPNPGMRGGPHGPGGPPGPHPGEFFGGGPNGPGPNGPRMMMPGPGPHHQLRGPPPGPH
GPPPHHMPQHQGPPPHHMPPHQGPPPHQGPPQHRPPMQFQGPPQMQRTGPGGPGPGGPGP
GPGPRGPEWPRHLPPAPQYGPPQHQMPHQMPPPHAGLPPPHHQLPPHQQGPPRGPAPLPQ
HPGVGGAPAPHVNPAFFSQQPPVQPAPAVQPPQPAPPGPGGPYGHPAHAPPPTQGPPPGA
RQPYGRPPANYPPTDGRAAHHAAPLGVPHAHAALAPHVPHAPISEAEFEEVMSRNRTVSS
SAIARAVSDAAAGEYASAIETLVTAISLIKQSKVAHDDRCKILISSLQDTLHGVETKSYG
GERRRSRSRERDARAHHRAPRRRERSASRYRDRSRDRDDRDRYRERSRERDRERDRDAYY
RDYRERERDRSRSRDRERTDHYNRGHSREERPRKSPVEAAAEGGAGDAAAKGRAAAPYYD
ERYRERRDREPPPADRDRDRDRDHRRDARH