New model in OGS2.0 | DPOGS210897  |
---|---|
Genomic Position | scaffold70:- 61716-62384 |
See gene structure | |
CDS Length | 669 |
Paired RNAseq reads   | 13 |
Single RNAseq reads   | 44 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003078 (4e-71) |
Best Drosophila hit   | Sox21b (9e-32) |
Best Human hit | transcription factor SOX-14 (1e-29) |
Best NR hit (blastp)   | GJ11556 [Drosophila virilis] (4e-31) |
Best NR hit (blastx)   | PREDICTED: similar to Dichaete CG5893-PA [Apis mellifera] (2e-32) |
GeneOntology terms    | GO:0003700 sequence-specific DNA binding transcription factor activity GO:0005634 nucleus GO:0045449 regulation of transcription GO:0008301 DNA bending activity |
InterPro families    | IPR000910 High mobility group, HMG1/HMG2 IPR009071 High mobility group, superfamily |
Orthology group | MCL39720 |
Nucleotide sequence:
ATGTCTTATCCGTTGGAAAATCCACAAGCAAAGTCAGTGACGAAACTATCGAGAAATTCA
AACCCCTATCACATAAAACGTCCCATGAACGCGTTTATGGTTTGGTCGAGGCTACAGCGG
AAGAAGATATCCTCTTTGAACCCGAAACTTCATAACTCCGAGATATCAAAACGGCTCGGT
CTAGAATGGAAGAGTCTAGACGACTCCGAGAAGAGACCGTTTATAGATGAGGCAAAGAGG
TTGCGGCTGAAACACATGCACGACTATCCAGACTATAAGTACAGACCGCGTCGGAAAAAC
AGGATGGACGCCTCAATATATGGACCTACTTCTTTATATTCATCTCGAGAGAGCTTCGTA
GAAATAGAACCGAGGGTCGAAGCCAGCTATCCGATACCAATCAACTATTCCGATCCGCAG
TACATGTACAACAACGTTATAAGTTACACGGTGCCTATAAATCAGGCTCCTTTCGTTTCC
CCCATAAGACCCAAAGAGGAGACCTTGCCGAGTTTAGATTTGAGGCCTCTGCCGTCGATC
GAGAGCATTTCCCCGAGGCCGTTCGCGGTCGTGAACCAGCAGATGATGGTGAAGTCTTAC
CCCAACCTGCACTACGTCCCTGAAGACGTCGCGAGGATATCGTATCATTACCCCTTCAGT
GTGCAGTAG
Protein sequence:
MSYPLENPQAKSVTKLSRNSNPYHIKRPMNAFMVWSRLQRKKISSLNPKLHNSEISKRLG
LEWKSLDDSEKRPFIDEAKRLRLKHMHDYPDYKYRPRRKNRMDASIYGPTSLYSSRESFV
EIEPRVEASYPIPINYSDPQYMYNNVISYTVPINQAPFVSPIRPKEETLPSLDLRPLPSI
ESISPRPFAVVNQQMMVKSYPNLHYVPEDVARISYHYPFSVQ