| New model in OGS2.0 | DPOGS215077 |
|---|---|
| Genomic Position | scaffold1700:- 20502-27516 |
| See gene structure | |
| CDS Length | 3807 |
| Paired RNAseq reads | 1151 |
| Single RNAseq reads | 2807 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007175 (0.0) |
| Best Drosophila hit | benign gonial cell neoplasm (4e-72) |
| Best Human hit | probable ATP-dependent RNA helicase YTHDC2 (3e-174) |
| Best NR hit (blastp) | PREDICTED: similar to YTH domain containing 2 [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to YTH domain containing 2 [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0003676 nucleic acid binding GO:0008026 ATP-dependent helicase activity GO:0005524 ATP binding GO:0000166 nucleotide binding GO:0004386 helicase activity GO:0016787 hydrolase activity |
| InterPro families | IPR020683 Ankyrin repeat-containing domain IPR002110 Ankyrin repeat IPR001374 Single-stranded nucleic acid binding R3H IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR007502 Helicase-associated domain IPR011709 Domain of unknown function DUF1605 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL13299 |
Nucleotide sequence:
ATGAGTTCTAAAAAGGGTAAGCGTAATTTAAGCAGTAAGCACGCCCCAATAGCGGAATCG
GTCAGTATAGCCTTAAAGATACAGCTGGATAAATTTCTAAGTGATGATAATGAAACAGAA
CTCAAGTTTCCATCGTTCCTATCAGCTCAAGAGCGAAGGTTTATCCATGAAACCGTTGCC
AAATTAGGACTCAAGTCTAAATCGCGCGGGAAAGGGGTTAATCGCTACATAACAATATAT
AAAAGAATTGGCTCAACTATTGTACAAAACGATGCCAAATTGATACTTGACTCGAATATG
AGATGTAGTATTACGGAGTTGTTCAATACATTTCCAATCACTAGCAAAGAGAAGGATGAT
TTAAGCTGTTGCCCTGAAAAAGAAAGAAGTCCTCAATTAGCGCACAAGTCTTTGGGACAG
TTAAATAATGGGGTCGCTCAGATACCAAACACAACATATAACCCAGAGTTAGTGAAGTTC
CGAGAGAAGCTACCGGTGTATGACCAGCGACAGGAGCTCCTAAATGCTATCCAAAATAAT
CAGGTCATAATAGTGGCGGGTGCTACAGGCTGTGGTAAGACTACACAGTTACCACAGTTG
ATCTTGGACTACTGTCAAGAGAATCATCAACCGGCGAGGATTTATTGCACACAGCCAAGG
AGAATTTCAGCTGTGTCTGTCGCTGAAAGGGTGGCGTTTGAACGAATGGAGAAGATTGGT
CAGTCCATTGGCTATCAAATACGCCTGGAGTCCAGAGTGAGCCCACGGACAGTACTCACA
TATTGCACCAATGGAGTGCTACTGAGAACATTGATGGCGGGAGATACGGCTCTAACAGGT
GTCACTCACGTCCTGGTGGACGAAGTTCACGAGCGAGATAAGTTCAGTGACTTCCTTCTG
ATAGCTCTAAAGGACTCGCTCACGAGGATGAAGGATCTCAAGCTGTTACTCATGTCGGCT
ACCATGGACACACAAATATTCTCCAGGTCTATATGTAGCATATATAACCTACCTTATATA
GATGAACGAAGAAGTTTCCAATATCTCGATTCTGCTCAAACGAAACACAAATTAAATCAG
GAGGAGAAAGAAGTGAAGGATGAGAAGGAGGTGCCAATAGATCCGGTGTTGCAAGCTGAT
ATGGATGAATTCCTTGACGAGTGTTTCAATGAAGGCAGTCTGGACTCGTTCAGTCAGGTG
TTATACATGGTGATGTCTGAGGGGGTTCCCGCGTCGTTGCCGCACTCTCGCTGTGGAAGG
ACGGCCCTGGTTGCCGCCGCCACCCACGGCCTGTCGCATGTCGCGTTACAGCTGCTCAGG
ATAGGTGCTGATCCAACAGCAAAAGATAAGAGTGGCAAAACACCGTACGACCACGCCGTA
GAGAACGGCCACCACGAGTGTGCCAAGATACTGTCGACGTTCAATCACGACGATGAGAAC
AAGAACAATCAAGAAGAAGACGACCCAGAAGATAACTTCCTGCTGGACGTCTACTACCAC
GCCTTCTCAGAGGAACTGATAGACCACGATCTCATGTTGGCGTTGGTGAAACATATACAC
CTGACCATGGCGAAGGGCAGCATCCTGATCTTCCTCCCGGGATACGACGATATAGTCACT
CTCAGAGACCTCATACAAGGCTGCTCGGAGATGAACACCATGAAGTTTCAAATATTCACA
TTACACAGCAACATGCAAACTTTGGACCAGAAGAAGGTTTTCAATCCGCTGCCGAGCGCG
AGGAAGATTATAATATCGACCAACATAGCGGAGACCTCTATAACCATTGACGACGTGGTC
TACGTCATAGACTCGTGCAAAGTGAAGGAAAAGTATTACGAGTCCGATGGGGGGGTTTGC
TCGTTGCAATGCGTATGGACTTCCAGAGCGTGTTGCCAACAACGGGCCGGCCGCGCGGGC
AGGACTAAACCGGGCCTCTGCTACCACATGTGTTCCAAACGACGCTTCAAAACACTACCT
CTGAACTCGATACCGGAAATACTAAGAGTTCCCCTCCAAGAGTTATGTCTCCACACAAAA
TTGTTGGCGCCTGGCAACACTCCGATAGCGGATTTCCTATCGAAGGCTCTCGAACCTCCG
TCGTTTTTGGCTGTTCGTAACGCTGTGACGTTGCTCAAGACCATCGGCGCGCTCACTCCG
ATGGAAGATTTGACGGAGATCGGACAACACCTGTTGGATCTGACTGTGGAACCCAAACTG
GGGAAAATGTTGCTGTACGCTTGCGTCATGAAATGCCTGGATCCCATATTGACGATCGTA
TGCAGTTTGGCCAACAAGGAACCGTTCCAGATCTCGCTCAACCCCGAGAACAGAAAAAAA
GGCAGTTCGGCGAGGAAGGAGTTCGCAGCTGACAGTTACTCAGATCACATGGCGTTACTG
CGGGCCTTCCAAGCGTGGCAGATGGCGCGAGCTAACGGCGCGGAGAAAGCTTTCTGTTCG
AGAAATTTAATATGCGGCGCGACCATGGAGATGATCGTAGGCTACAGGTCACAGCTGTTG
GCGCAACTCCGAGCTCTGGGTCTCGTCAAGGCTCGAGGCTCGGGCGATATAAAAGACGTG
AATTTGAACTCGGAGAAGTGGCACGTTGTTAAAGCGGTTCTGGTGAGCGGACTCTATCCT
TCCATAGCGAGGGTCGACAGAGACACGTCCACACTGAGGACGTCCAAGGAAGTGAAGGTG
GCGTTCCATCCGAGCTCGACGCTGCATCGCGGCGGGGGAGTGTCGGGGTCGCAGAAGTCG
GTCCAGAGCCTCCCGACCGACTGGGTGGTGTTCGAGGAGATATCTAGAGTTGGAAGGTTT
TGCTTCATTCGCTGCAACACCCTCGTCACGCCGTTGACCGTCGCGCTGTTCGGGGGGCCG
TTGAGAGTTTCGACCGCAGCGCTGTCACAGAGGGCGAATCCACCAGGGCTGTCCAGTGAC
TCGGACAGCGAAGTCGAAGAGAGCAATTCCTCTCCAGACACGGCCATCCTGACGCTGGAC
GACTGGATGGCGTTCACAGCGGACGCGTCGGACGCGATTAGCGTGTACTACCTGCGGCAG
AAGCTGTGCGCCCTAGTCATACGCAGGATGTCCAACCCGGCGAAGCCCATGACACCGCTG
GACGAACAGATACTCAACGCCGTGGTGCACGTGCTGGGAGCGGAGGAGAAAAACATAGGG
CTCAATCAGCCGACCGGCATCGGACAGAGACCGAAACCGCTCACGTTGGATTCACCGAAC
TGGCGGATGAGGGTCGACGAGGAACAGTACCGGCACGAGAACAAGTACCACCCGCAGTAC
AGCCACGCGGAGCTCGCGAATAACTTCTACCAGAATAACTACGCGTACAGGAACGGCCAG
AGGAGCGGGTGGAGGGAACCGGCCCAGGGCTTCTCGCCGCAGTACGGAGGACCGAAGAGT
CCGATGTCACCGGCGAAAGCTATGGGAAGCATGGAAAAATACGTCGACAGCGAAGCAAAC
ACGCGCTACTTCGTGGTGCGAGCCGACGAAGTGCATTCCGTAGAAGCGCTGCAAGCGAGC
GCCGGCGGGTTGTTCAACCAGAACACCGCCAAGAAACTCGTGAAGATTAAACAGGTCGGC
CCCAAGTTCATACATCGTGTTATACAGAATGACAATGAGGGTAGCCGCGTGGTTGTCTTC
TTCTCATGTTCGGGTGCTTCCAAGTTCATCGGCGCTGCCACCATCACGGACGGCAGTGGA
GCGACTACAGCCAGTGGTACCAACAACAACACGCCGACGCTGGAATGGCTGTCCACACAA
CACGTGCCGTATCACATGGTCCGGTGA
Protein sequence:
MSSKKGKRNLSSKHAPIAESVSIALKIQLDKFLSDDNETELKFPSFLSAQERRFIHETVA
KLGLKSKSRGKGVNRYITIYKRIGSTIVQNDAKLILDSNMRCSITELFNTFPITSKEKDD
LSCCPEKERSPQLAHKSLGQLNNGVAQIPNTTYNPELVKFREKLPVYDQRQELLNAIQNN
QVIIVAGATGCGKTTQLPQLILDYCQENHQPARIYCTQPRRISAVSVAERVAFERMEKIG
QSIGYQIRLESRVSPRTVLTYCTNGVLLRTLMAGDTALTGVTHVLVDEVHERDKFSDFLL
IALKDSLTRMKDLKLLLMSATMDTQIFSRSICSIYNLPYIDERRSFQYLDSAQTKHKLNQ
EEKEVKDEKEVPIDPVLQADMDEFLDECFNEGSLDSFSQVLYMVMSEGVPASLPHSRCGR
TALVAAATHGLSHVALQLLRIGADPTAKDKSGKTPYDHAVENGHHECAKILSTFNHDDEN
KNNQEEDDPEDNFLLDVYYHAFSEELIDHDLMLALVKHIHLTMAKGSILIFLPGYDDIVT
LRDLIQGCSEMNTMKFQIFTLHSNMQTLDQKKVFNPLPSARKIIISTNIAETSITIDDVV
YVIDSCKVKEKYYESDGGVCSLQCVWTSRACCQQRAGRAGRTKPGLCYHMCSKRRFKTLP
LNSIPEILRVPLQELCLHTKLLAPGNTPIADFLSKALEPPSFLAVRNAVTLLKTIGALTP
MEDLTEIGQHLLDLTVEPKLGKMLLYACVMKCLDPILTIVCSLANKEPFQISLNPENRKK
GSSARKEFAADSYSDHMALLRAFQAWQMARANGAEKAFCSRNLICGATMEMIVGYRSQLL
AQLRALGLVKARGSGDIKDVNLNSEKWHVVKAVLVSGLYPSIARVDRDTSTLRTSKEVKV
AFHPSSTLHRGGGVSGSQKSVQSLPTDWVVFEEISRVGRFCFIRCNTLVTPLTVALFGGP
LRVSTAALSQRANPPGLSSDSDSEVEESNSSPDTAILTLDDWMAFTADASDAISVYYLRQ
KLCALVIRRMSNPAKPMTPLDEQILNAVVHVLGAEEKNIGLNQPTGIGQRPKPLTLDSPN
WRMRVDEEQYRHENKYHPQYSHAELANNFYQNNYAYRNGQRSGWREPAQGFSPQYGGPKS
PMSPAKAMGSMEKYVDSEANTRYFVVRADEVHSVEALQASAGGLFNQNTAKKLVKIKQVG
PKFIHRVIQNDNEGSRVVVFFSCSGASKFIGAATITDGSGATTASGTNNNTPTLEWLSTQ
HVPYHMVR