| New model in OGS2.0 | DPOGS206206 |
|---|---|
| Genomic Position | scaffold1307:- 59801-65060 |
| See gene structure | |
| CDS Length | 1179 |
| Paired RNAseq reads | 2669 |
| Single RNAseq reads | 7723 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011988 (3e-70) |
| Best Drosophila hit | small nuclear ribonucleoprotein 70K (8e-56) |
| Best Human hit | U1 small nuclear ribonucleoprotein 70 kDa (8e-53) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP006755-PA [Acyrthosiphon pisum] (1e-82) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP006755-PA isoform 1 [Tribolium castaneum] (5e-59) |
| GeneOntology terms | GO:0005692 U11 snRNP GO:0030532 small nuclear ribonucleoprotein complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0030619 U1 snRNA binding GO:0003729 mRNA binding GO:0005685 U1 snRNP GO:0048025 negative regulation of nuclear mRNA splicing, via spliceosome GO:0000166 nucleotide binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus GO:0007052 mitotic spindle organization GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait IPR022023 U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal |
| Orthology group | MCL12117 |
Nucleotide sequence:
ATGACGCAGTTTTTACCTCCAAATCTCCTCGCGTTATTCGCGGCGAGGGATCCTATACCA
TATTTGCCGCCGGCAGCGAAACTCCCACACGAGAAAAAGCAGAAAGGCTACGATGGTGTC
GGCGCCTTTCTAAATGTCTTTGAGCATCCGTCAGAGACTCCGCCCCCCACTCGTGTGGAG
ACGCGCGAGGAGCGCCTGGAGCGCCGGCGACGAGAACGAGCTGAACAGACGGCATACAAG
TTAGAACAGGAAATAGCTTTGTGGGATCCAACCACCAATGCCAAGGCTACAGGGGATCCA
TTCAAAACTCTATTTGTTGCCCGTGTTAATTACGATACCTCTGAATCCAAGCTACGTAGA
GAGTTTGAGGGCTATGGACCAATTAAAAAAATCCACATGGTTTACAGTAAGGAGAACGGT
AAGCCACGCGGGTATGCCTTCATTGAGTACGAACATGAGAGGGACATGCACTCCGCCCAG
GCGGCCAGTGCGAGTGCGCTCCTCCAAGAAGGTCGTAGCCAGAGACCGCGTTCGGCCATC
GTTACGGCTTACAAACACGCCGACGGCAAGAAGATCGACGGGAAGCGGGTGTTGGTGGAC
GTGGAGAGGGCTAGGACGGTGAAGGGTTGGCTGCCGAGGAGACTGGGCGGGGGTCTAGGA
GGGACGCGCCGAGGCGGAGCTGACGTGAACATCAAGCACTCGGGGCGAGAAGACAACGAG
CGGGAGAGGGAGAGGTACAGGCTGGAGCAGAGAGACAGAGACAGAGACGAGAGGAGGGAC
AGGGAGCGTGTCCGTCGCGGTCGCAGCCGTTCCAGGTCCCGCCGCCGATCAGGCTCCAGA
CCGAGGAGGAGAGAGAGGGAGAGAGAGAAGAGAGAGGAAGATGTGGACAGGACAAGGCGC
AGGAGGTCCCGGTCACGTTCGGAGCGGCGGCGGGAACGACGGGACAGGGATAAGGATAGA
GAAAAGGACAGGGACAAGGATAGGGATAAGAGGCGGAGGAGGGATCGGGACAGGAAGGAG
ACGAAGATCAAGCCCGAGGATATCAAGATTAAGGAGGAGCCTCAGGATGACTATCCCGAG
TTCAGCCTGCCGCCCCTGGATGTCCAGATCAAGCAGGAGCCGGAAGACGAGAACAAGTAT
AACCCAGAAGATGCCAACGGTGATGATTATAACTATTGA
Protein sequence:
MTQFLPPNLLALFAARDPIPYLPPAAKLPHEKKQKGYDGVGAFLNVFEHPSETPPPTRVE
TREERLERRRRERAEQTAYKLEQEIALWDPTTNAKATGDPFKTLFVARVNYDTSESKLRR
EFEGYGPIKKIHMVYSKENGKPRGYAFIEYEHERDMHSAQAASASALLQEGRSQRPRSAI
VTAYKHADGKKIDGKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGADVNIKHSGREDNE
RERERYRLEQRDRDRDERRDRERVRRGRSRSRSRRRSGSRPRRREREREKREEDVDRTRR
RRSRSRSERRRERRDRDKDREKDRDKDRDKRRRRDRDRKETKIKPEDIKIKEEPQDDYPE
FSLPPLDVQIKQEPEDENKYNPEDANGDDYNY