| New model in OGS2.0 | DPOGS209755 |
|---|---|
| Genomic Position | scaffold92:- 37145-41542 |
| See gene structure | |
| CDS Length | 1200 |
| Paired RNAseq reads | 630 |
| Single RNAseq reads | 1797 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005395 (5e-173) |
| Best Drosophila hit | loquacious, isoform B (1e-86) |
| Best Human hit | interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1 (2e-36) |
| Best NR hit (blastp) | loquacious [Bombyx mori] (2e-172) |
| Best NR hit (blastx) | loquacious [Bombyx mori] (3e-151) |
| GeneOntology terms | GO:0003725 double-stranded RNA binding GO:0031054 pre-microRNA processing GO:0005737 cytoplasm GO:0030718 germ-line stem cell maintenance GO:0048132 female germ-line stem cell division GO:0005515 protein binding GO:0030422 production of siRNA involved in RNA interference GO:0007417 central nervous system development |
| InterPro families | IPR001159 Double-stranded RNA-binding IPR014720 Double-stranded RNA-binding-like |
| Orthology group | MCL14261 |
Nucleotide sequence:
ATGGAATTGGAATCTGTTCTGCCTTTACATTTACTCTCACCAACAGTGGATAGATTACAC
AAAATGATGGACGGTGGAGTAGTGCACCCCCATCCAGGCGTGGTGCATGGAGGTGTTCCA
GTTATCCACGGGATGCCGGTCCACGCGGGTCCCGACAGCGAACACGCTCCACACCCTCGC
CGGCGATATCCTAACAGACCCAAGCCTATCAATAACCTCGAAAGGCTACCTCTTGATGAA
GCAGCGAAACGGGAAATGGAATCTCTCCCTATGAAAACACCAGTATCAGTGCTTCAAGAG
CTTCTGGCTAGACGAGGCACAGTTCCCAAATATGAATTAGTTCAGATCGAGGGTATGATC
CATGAACCCACATTTCGTTATCGAGTAACTGTTGCTGATCTTGTTGCTTTAGGCACTGGA
AGATCAAAGAAGGAGGCCAAACATTCAGCCGCAAAGGCTTTGTTGGATAAACTTACTGGC
GCTACACCAGCCGATCAGCCCACCAATGGAACAGTCCCGGAAACAAGTACTGTGGTGTCG
TCCTTTGAAGATAAATTAATGGGCAACCCTGTGGGATGGCTTCAGGAACTTTGTATGTCT
CGTTTTTGGCCACCGCCTTCCTACCACGCTGAGAATGATGATAATGTTGCCAGACGTCTG
CCACACGAGCGCCAGTTCACTATAATATGTACTCTGCTTAAACGTCGTGAAGTAGGTACG
GGGAAATCAAAGAAACTTGCCAAACGTCAAGCGGCTTACAAAATGTGGCAAGCATTGCAG
GATAATCCACCAGAAGTTTTTCAACCAGAGGAAGAGGGCGGTGTAGCGGCGAGATATGCC
GATTTGAAAGATAGTAAAATAACAACACTCACAACCAGCCATAGCCACAAAGTGTCGCAG
TTCCACAAACATCTCAAACAGTCTGTGGGACCCAACCTGGTCAAGTTGCAGGTAACACCG
CTCAACAACAAGGATTTCAATTTTGTTCAGTTCTTACAAGAAATTGCATCGGAGCAGTCC
TTTGAAGTGACATATGTTGATATAGAAGAGAAGACTATGACAGGTCGCTCCCAGTGTTTG
GTACAGTTGTCAACTTTACCAGTGGCTGTCTGTTATGGCTCAGGTTTAACGAGCAAGGAC
GCTCAGTCATCTGCAGCTCAGAACGCCCTGGAATATCTCAAAATTATGACCAAGAAGTGA
Protein sequence:
MELESVLPLHLLSPTVDRLHKMMDGGVVHPHPGVVHGGVPVIHGMPVHAGPDSEHAPHPR
RRYPNRPKPINNLERLPLDEAAKREMESLPMKTPVSVLQELLARRGTVPKYELVQIEGMI
HEPTFRYRVTVADLVALGTGRSKKEAKHSAAKALLDKLTGATPADQPTNGTVPETSTVVS
SFEDKLMGNPVGWLQELCMSRFWPPPSYHAENDDNVARRLPHERQFTIICTLLKRREVGT
GKSKKLAKRQAAYKMWQALQDNPPEVFQPEEEGGVAARYADLKDSKITTLTTSHSHKVSQ
FHKHLKQSVGPNLVKLQVTPLNNKDFNFVQFLQEIASEQSFEVTYVDIEEKTMTGRSQCL
VQLSTLPVAVCYGSGLTSKDAQSSAAQNALEYLKIMTKK