| New model in OGS2.0 | DPOGS212197 |
|---|---|
| Genomic Position | scaffold197:- 151245-155811 |
| See gene structure | |
| CDS Length | 1779 |
| Paired RNAseq reads | 882 |
| Single RNAseq reads | 2595 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000991 (5e-134) |
| Best Drosophila hit | Histidyl-tRNA synthetase, isoform A (2e-165) |
| Best Human hit | histidyl-tRNA synthetase, cytoplasmic (1e-159) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC008324 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC008324 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0004821 histidine-tRNA ligase activity GO:0005737 cytoplasm GO:0000166 nucleotide binding GO:0006427 histidyl-tRNA aminoacylation GO:0005524 ATP binding |
| InterPro families | IPR004516 Histidyl-tRNA synthetase, class IIa IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain IPR004154 Anticodon-binding IPR000738 WHEP-TRS IPR009068 S15/NS1, RNA-binding IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup IPR006195 Aminoacyl-tRNA synthetase, class II |
| Orthology group | MCL11208 |
Nucleotide sequence:
ATGGCAGAACACAATGAAATATTGTTGAAAAAAATTCAGGAGCAAGGAGATTTAGTGAGA
AAGCTGAAAGCAGAAAAGGAATCAACCGAGAAGGTTATAAATGAATATTCTATTCAAGAT
CTCGGAGAATTTGATAAATATATTTCCCAGTACAGTTATATCAATGGGTATACGCCTAGT
AGATTAGATTTCGAAGTTTATAATAATCTAAAAAATGTAGATTTAAAGAGATATTCGTAC
GTTAAGCGATGGTGGTGCCATATGAGGAGTTTCAGCAACTCTGAAATAACGCAACTTCCT
TTTATGAAACCTCCAGATGCTGTAAAATTAATTTTAAATTCCAACCAGAACCATGACCAA
AAGATTAAAGAAGAAGTAGCTAAGTTATTGGCTTTAAAAGCTCAGCTCTCCAATGATGCC
CCTCCACAAAAGTTTGTACTCAAGACTCCTAAAGGTACGAGGGACTACAACCCTCAACAG
ATGGCGATAAGGAATAGCGTTTTGCAAAAAATTATATCAGTATTCAAGAAACATGGTGCA
GAATGTATCGACACCCCCGTCTTCGAGTTAAAGGAAGTGTTAACTGGCTTTATGCCGCTT
CTGAGTTTCAAGATTTATGATCTGAAAGACCAAGGCGGAGAGATACTTTCATTGAGGTAT
GACCTCACCGTCCCACTCGCAAGATATCTGGCTATGAATAAGATTAATAACTTGAAGAGG
TATCACATCGCTAAAGTGTACAGGAGAGACAACCCGGCCATGACGAGGGGTAGATATAGG
GAGTTTTATCAATGTGATTTTGATATAGCCGGCCAGTTTGACCCCATGGTGCCGGATGCG
GAATGTCTTAAAGTAGTCACGGAGATATTGGACTCTTTGGACATTGGCAAGTACATGCTG
AAGGTGAATCACAGATGTCTACTGGACGGCATGTTTGAAGCTTGCGGTGTACCAGCAGAG
CAGTTCCGCTCTACATGCTCTACTATTGATAAACTCGATAAGTCACCATGGGAAGAGGTG
CGGACGGAAATGATCAGTGAGAAGGGCGTTACACCGGAAGCAGCGGATCGCATCGGCGAA
TACGTCAGGCTGAACGGAAGTACGGAACTCGTGGATACATTGCTTCAAGATGAAAAACTA
TCGAAGTCTAAAAGCGCTGTAGAGGGTTTACAAGGGATAAAATTGCTGCTAGAGTATTGT
GAACTCTACGGCATTAAGGATAAGGTGCTGTTCGATCTGAGCCTCGCCAGAGGCTTGGAT
TACTACACTGGCATCATATATGAAGCTGTACTGACCGAACCAATCAAGATCGGTGGTGAA
GAGCAAAGTGTGGGCTCGATAGCTGGCGGGGGCAGATATGATAACCTCGTTCCATGTGTG
GGTATCAGTGTGGGTGTGGAGCGTGTGTTCTCAGTGCTGGAGGCTCGCCTGGCGGCCGGG
GAGCTGAGCGTGCGCCCCTCGGAGGTGGATGTGTATGTAGCGTCCGCTCAGAAAGATTTC
CTAACCACGAGAATGAGGATATGCAATGAGTTGTGGGGCGCTGGCATTAAGGCCGAGCAG
CCATACAAGAAGAATCCAAAAATGCTAAATCAATTGCAACACTGCGAAGAGAATGGTATA
CCGCTGGCTGTGATACTGGGGGAGTCGGAATTAAAACGTGGATTGGTCAAAATAAGAAAC
ATAGCTACCAGACAGGAAGATGAGGTGCCGAGAGAGAAGCTCGTTGAGGAACTGAAGAAT
AGAATAAGCATGTTGCATGTCAATGTAAACGGACTCTAG
Protein sequence:
MAEHNEILLKKIQEQGDLVRKLKAEKESTEKVINEYSIQDLGEFDKYISQYSYINGYTPS
RLDFEVYNNLKNVDLKRYSYVKRWWCHMRSFSNSEITQLPFMKPPDAVKLILNSNQNHDQ
KIKEEVAKLLALKAQLSNDAPPQKFVLKTPKGTRDYNPQQMAIRNSVLQKIISVFKKHGA
ECIDTPVFELKEVLTGFMPLLSFKIYDLKDQGGEILSLRYDLTVPLARYLAMNKINNLKR
YHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMVPDAECLKVVTEILDSLDIGKYML
KVNHRCLLDGMFEACGVPAEQFRSTCSTIDKLDKSPWEEVRTEMISEKGVTPEAADRIGE
YVRLNGSTELVDTLLQDEKLSKSKSAVEGLQGIKLLLEYCELYGIKDKVLFDLSLARGLD
YYTGIIYEAVLTEPIKIGGEEQSVGSIAGGGRYDNLVPCVGISVGVERVFSVLEARLAAG
ELSVRPSEVDVYVASAQKDFLTTRMRICNELWGAGIKAEQPYKKNPKMLNQLQHCEENGI
PLAVILGESELKRGLVKIRNIATRQEDEVPREKLVEELKNRISMLHVNVNGL