| New model in OGS2.0 | DPOGS202337 |
|---|---|
| Genomic Position | scaffold579:- 36968-49352 |
| See gene structure | |
| CDS Length | 2769 |
| Paired RNAseq reads | 6931 |
| Single RNAseq reads | 18277 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005003 (0.0) |
| Best Drosophila hit | CG9461 (0.0) |
| Best Human hit | F-box only protein 11 isoform 4 (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to CG9461-PA [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG9461-PA [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0008270 zinc ion binding GO:0004842 ubiquitin-protein ligase activity GO:0070923 siRNA loading onto RISC involved in chromatin silencing by small RNA GO:0005737 cytoplasm GO:0060966 regulation of gene silencing by RNA GO:0048471 perinuclear region of cytoplasm |
| InterPro families | IPR003126 Zinc finger, N-recognin IPR001810 F-box domain, cyclin-like IPR011050 Pectin lyase fold/virulence factor IPR022364 F-box domain, Skp2-like IPR006626 Parallel beta-helix repeat IPR006633 Carbohydrate-binding/sugar hydrolysis domain IPR013993 Zinc finger, N-recognin, metazoa IPR012334 Pectin lyase fold IPR022441 Parallel beta-helix repeat-2 |
| Orthology group | MCL15709 |
Nucleotide sequence:
ATGCCTAGTGCCTCCTTTTCCTCTTCGCGTTCTTACGTCCGTAGATCGCGAAGAAAAGGT
GGTCATCGGATACCATTGCCTTCCAGGACACAATCGAGTGAGCCATGTGAATCAGTGCCG
TGTCCGAATAACGTGACGGGGAGCGCTATGGCAGCTACAGCATGTGCAGGTCCGAGTGGC
AGTGGTGGGGGTGGATCCCCGCCGGTCCCCGCGGCCGCAGCCGCCACCACAGCTGGTCAT
CACAGCCCATATGACTTGCGTAGGAAGTCACCACCGGCTTACCATGAACCGGGGCCATCG
GGTACCTGCTCTCTTCCAGCAAGGAAAAGGCCCAGGACGTCGCTGTCCCAGGGTGTGGAT
GTGTGTAACGTGTCCCAGTACCTTCAGTACGAGCTGCCTGATGAGGTGTTGCTCTGCATC
CTCTCACACCTGACAGAGAGGGACCTGTGCCGCGTCGCTCAGGTCTGCAAGCGGTTCAAC
ACCATCGCCAATGATACAGAGCTGTGGAAGAGTTTATATCAGTCGGTGTTTGAGTACGAC
ACTCCTCTGATGCACCCCGCTCCGTGCCAGTTCGAGTTCGTGGCCGCGGACGACTGTGAG
GCCGACAACCCCTGGAAGGAGAGCTTCAGGCAGCTCTACTACGGGATACACGTGAGACCC
AACTACCGCCCCAAGAAGGACTCTCGGATCAAACACTTCAACACTATCAGGGCGGCCCTA
GAGTACGTGGAGGAGCGCGGCGGGTCTCCGGCGTCCGGCGCTTGTTCGTGCTCGTGCGGC
GCGTCCGCGTGCTCGTGCCGGCGCACGCCCTCCGCCCCGGCCGCCGCAGCCCCCGCGCCC
GCCCTGCTGTTCGTGCACGCCGGCCTCTACCAGGAGGAGTGCCTAGCGATTGACACGGAC
GTGCAGCTCATTGGTTGTGCCCCCGGTAATGTAGCCGAGTCTGTGGTGTTGGAACGCGAG
GCGGAGTCTACGCTGACGTTCGCTGAGGGCGCTAACAGGTCATATGCTGGTCACATGACG
CTCAAGTTCTCACCGGACGCCACGAGTACCATGCAGCATCACAAGCATTACTGTCTGGAG
GTGTCCGATAACTGTTCGCCGACAGTCGACCATTGTATCATACGGAGCGCTAGTGTCGTG
GGTGCGGCCGTGTGCGTGAGTGGAGCTGGGGCTAATCCGGTCATAAAGCACTGCGACATC
AGCGACTGCGAGAACGTAGGGCTGTACGTAACGGACTACGCACAGGGAGCGTACCAAGAC
AATGAGATATCGAGGAACGCCCTCGCCGGTATATGGGTGAAGAACTTCGCCAACCCCATC
ATGCGTCGCAACCACATACACCACGGCCGGGACGTCGGTATATTCACCTTTGAAAATGGA
TTGGGATACTTCGAAGCCAACGACATCCACAACAACAGAATCGCCGGTTTCGAAGTGAAG
GCCGGCGCCAATCCTACGGTAGTGCACTGCGAGATACATCACGGTCAAACGGGCGGCATC
TACGTGCACGAGTCGGGACTGGGGCAGTTCATAGATAATAAGATACACTCCAACAACTTC
GCCGGCGTCTGGATAACCTCCAACAGCAACCCCACCATCCGGCGCAACGAGATATACAAC
GGACACCAGGGCGGGGTTTATATATTCGGGGAGGGGCGCGGACTTATTGAACACAATAAT
ATATATGGGAACGCGTTGGCCGGAATACAGATTCGCACAAACAGTGATCCTATAGTGAGG
CACAATAAGATCCACCACGGCCAGCACGGCGGTATATACGTACATGAGAAGGGTCAGGGG
TTGATCGAGGAGAACGAGGTGTACGCCAACACCCTGGCCGGGGTCTGGATCACGACCGGC
TCCACTCCCGTGCTGCGGCGTAACCGCATACACTCGGGGAAACAGGTCGGCGTATATTTC
TATGACAACGGCCACGGAAAGTTGGAAGACAATGATATATTCAACCACCTGTACTCCGGA
GTGCAGATCAGGACCGGCAGCAACCCCGTGATCCGAGGCAACAAAATCTGGGGCGGCCAG
AACGGGGGCGTGCTGGTGTACAACGGCGGCCTCGGCCTGCTCGAACAGAACGAAATATTC
GATAACGCCATGGCCGGGGTGTGGATAAAGACTGACTCAAACCCAACATTAAAAAGGAAT
AAGATCTTTGATGGCAGAGATGGTGGCATCTGCATTTTTAACGGAGGAAAGGGTGTGTTA
GAAGAGAACGACATTTTTCGGAACGCTCAGGCCGGCGTGTTAATTTCCACCCAGAGTCAC
CCTGTACTCCGTAGGAATAGAATCTTCGACGGCCTGGCCGCTGGTGTCGAGATCACAAAC
AATGCCACGGCGACTCTCGAACACAATCAGATATTTAATAATCGGTTTGGAGGATTGTGT
TTAGCGTCGGGCGTGTCGCCGCTGGTGCGAGGCAACAAGATCTTCAGCAACCAAGACGCC
GTGGAGAAGGCTGTTGGCGGCGGACAGTGCCTGTACAAGATATCCTCGTACACCTCCTTC
CCGATGCATGATTTCTATAGATGCCAGACATGTAACACGACTGATCGTAATGCCATATGT
GTCAATTGCATCAAGACATGCCATTCTGGACATGACGTGGAATTTATACGCCATGACAGA
TTCTTCTGCGACTGCGGTGCTGGGACTCTGTCCAACCAGTGCCAGTTGCAGGGCGAGCCT
ACCCAGGACACGGACACGCTGTACGACTCAGCCGCGCCGATGGAGTCGCACACGCTCATG
GTCAACTGA
Protein sequence:
MPSASFSSSRSYVRRSRRKGGHRIPLPSRTQSSEPCESVPCPNNVTGSAMAATACAGPSG
SGGGGSPPVPAAAAATTAGHHSPYDLRRKSPPAYHEPGPSGTCSLPARKRPRTSLSQGVD
VCNVSQYLQYELPDEVLLCILSHLTERDLCRVAQVCKRFNTIANDTELWKSLYQSVFEYD
TPLMHPAPCQFEFVAADDCEADNPWKESFRQLYYGIHVRPNYRPKKDSRIKHFNTIRAAL
EYVEERGGSPASGACSCSCGASACSCRRTPSAPAAAAPAPALLFVHAGLYQEECLAIDTD
VQLIGCAPGNVAESVVLEREAESTLTFAEGANRSYAGHMTLKFSPDATSTMQHHKHYCLE
VSDNCSPTVDHCIIRSASVVGAAVCVSGAGANPVIKHCDISDCENVGLYVTDYAQGAYQD
NEISRNALAGIWVKNFANPIMRRNHIHHGRDVGIFTFENGLGYFEANDIHNNRIAGFEVK
AGANPTVVHCEIHHGQTGGIYVHESGLGQFIDNKIHSNNFAGVWITSNSNPTIRRNEIYN
GHQGGVYIFGEGRGLIEHNNIYGNALAGIQIRTNSDPIVRHNKIHHGQHGGIYVHEKGQG
LIEENEVYANTLAGVWITTGSTPVLRRNRIHSGKQVGVYFYDNGHGKLEDNDIFNHLYSG
VQIRTGSNPVIRGNKIWGGQNGGVLVYNGGLGLLEQNEIFDNAMAGVWIKTDSNPTLKRN
KIFDGRDGGICIFNGGKGVLEENDIFRNAQAGVLISTQSHPVLRRNRIFDGLAAGVEITN
NATATLEHNQIFNNRFGGLCLASGVSPLVRGNKIFSNQDAVEKAVGGGQCLYKISSYTSF
PMHDFYRCQTCNTTDRNAICVNCIKTCHSGHDVEFIRHDRFFCDCGAGTLSNQCQLQGEP
TQDTDTLYDSAAPMESHTLMVN