New model in OGS2.0 | DPOGS215756  |
---|---|
Genomic Position | scaffold1525:- 32303-35435 |
See gene structure | |
CDS Length | 2040 |
Paired RNAseq reads   | 1595 |
Single RNAseq reads   | 4066 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003634 (2e-42) |
Best Drosophila hit   | topoisomerase I-interacting protein (4e-26) |
Best Human hit | E3 ubiquitin-protein ligase Topors isoform 1 (3e-19) |
Best NR hit (blastp)   | PREDICTED: similar to topoisomerase 1-binding RING finger [Apis mellifera] (3e-76) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC030677 [Tribolium castaneum] (2e-52) |
GeneOntology terms    | GO:0017033 DNA topoisomerase I binding GO:0008270 zinc ion binding GO:0004842 ubiquitin-protein ligase activity GO:0005652 nuclear lamina GO:0005700 polytene chromosome GO:0005634 nucleus |
InterPro families    | IPR017907 Zinc finger, RING-type, conserved site IPR001841 Zinc finger, RING-type IPR013083 Zinc finger, RING/FYVE/PHD-type IPR018957 Zinc finger, C3HC4 RING-type |
Orthology group | MCL12635 |
Nucleotide sequence:
ATGGACACGCTGTCAACATCAGCTCAAGACGACAGTTCGGGAGCTAATCCCAGCGGTGTG
AAGAGTGATGACAGCAGTCCTCGGAATGAGTCGGGTAGAGGTTCCCCACCACCAAATTGT
GCGATATGTCTCGGCACATGCAGAAACAAGTCATTCACTGACACCTGTCTTCATGAATTC
TGTTTCAAATGTCTACTTACCTGGAGCAAAGTAAAGGCAGTGTGTCCTCTGTGTAAACAA
AACTTTAGATCAATCATACACAATGTCCGCTCAAATCACCAGTATGATGAGTATACCGTC
GAGCAACACCACACAGAGGAAATTACGGAGAGGATTGATATTGACAATCTTACAACCACA
AGGAGATTTAGATACAGGACGACGCTTACCCTACCGCGACGCGAGACCATTGCTATCCAG
CAACTGCTGATGCATTACCCGTTAATGGCGGACGTGTTCCCCTCCCCGCGCTCCCCCGCC
TCGCGCTCCCCCGCCGCTCCCGCCCCCTCGTCCACCGCACCCCCACTACGTAGACGCTCA
CCAGCCTCATTCAGGCGCTCAGTATATAGATACAACCTCTGGGCCAGACCGCTACCGGAT
TTCACCGGACGTTTCAGAGACTGTTCCCCGGAATTCTACAGGTACAACGATTCACAGATC
CACAGACTGGTGCCATGGCTCAATAGAGAATTGCATTATCTGTTGAACGAGAACGTTGGG
CACATCGCCTACGTGATCGCCAGGATAATAGAACTGCTTCCGGAATACCACATCACATCG
TCGGAGTTCAGAGACAGGATGCGGTCGTATTTCGGGGACAGGACCAGGCATTTCCTGCAT
GAGTTGTACAACTTCGCTTCGACTCCTTACGACATGACCGGCTACGATCGGAACGTGCAG
TACACGACCGATCCCAACATGTCTACTATGGTGAATGAAGTGATCTCTAGTTCGGAGTCT
GAAGGCAGCGGGGACTCGGATCTCGTGATGATATCCAGTTCTGAGCCGGCCGAGCCTCCA
CCAGGTCCTTCCAGAGTTCCAGCCCCCGTCTACCCTAACAACTACATCCCCGAGCCACCA
CCGAACAACGTCATCCCCATCGAGACTATTTCACAGTCCGACACCGATGATGACTCGTCA
GAAGTTATGGTGGTCGGCTACATCAAGCCTCCTCAAGACCGAACCCCAGAGGTCGTCGAC
CTGCTCGGATCGGACAGCGACGTCATAGTGCAAGAAACCTCAGAGCAACCGCAAAGCAAC
GAAACTCCAGAGAGATCATCTCCGCGCGTGAAACTCACTATGACCAGCGCGTCGCATTCC
TCGAGGAGGGACAGCTCGGACAGTGACGGCAGTGCGTACACGCCGTCGCCGCCGCCTCAC
AGCAGCAGGCAAGCCTCTCAAGACAGCGACGCGTCCTCGGAGAAGTGCTCGTCGTCGGAC
ATGTCGGACGCAGCCCGCAGGTCCTCACAGCCTTCCCGCACGTCGTCGTCGTCCTCGTCC
TCGTCCTCGTCGCCGTCGTCCTTGACCAGCTCCTACTACACGTCATCCAGCGAATCGGAG
TCCAGCGACGACAACGTCAAGAGGAAAAAGGCGAGGCGAAAACTCACGGCGACGGAGAGG
AACAAGAGAAACGCGAAGAAACGCCCGCAGCGGACGAATCACAAGAACAGGAAGCTGTCG
AATGTACAGGAGAGGAAACAGAGCAAACGGAAATCGCAGTCCGGTAAAGGAGTGAAGTCG
TCCAAGAAACCTAGCGAGGTCGCGCCAGAGGAGACGCAGACGGACTTGAATCAGCCGGGG
ACGAGCGGCACTGCGAGGAATACTAGGAAACGAAAAATGGAAGTGAAGAGGCGCACCGTG
AGCCGCGAGAGTAAAAGACTGAAGAGTGTTGTTAGTGTTATAAAAGTCGCAGGTGAATCC
AGTTCCCGGGCTAACGTACAGTCCTCACATTTCAGCGTTGTCATTCGTAATAACCGCGAC
TGTTCGGATTCGGACGACGACATCCCTCTGAATCTAACCATAACCAAGTCATCGTCATAG
Protein sequence:
MDTLSTSAQDDSSGANPSGVKSDDSSPRNESGRGSPPPNCAICLGTCRNKSFTDTCLHEF
CFKCLLTWSKVKAVCPLCKQNFRSIIHNVRSNHQYDEYTVEQHHTEEITERIDIDNLTTT
RRFRYRTTLTLPRRETIAIQQLLMHYPLMADVFPSPRSPASRSPAAPAPSSTAPPLRRRS
PASFRRSVYRYNLWARPLPDFTGRFRDCSPEFYRYNDSQIHRLVPWLNRELHYLLNENVG
HIAYVIARIIELLPEYHITSSEFRDRMRSYFGDRTRHFLHELYNFASTPYDMTGYDRNVQ
YTTDPNMSTMVNEVISSSESEGSGDSDLVMISSSEPAEPPPGPSRVPAPVYPNNYIPEPP
PNNVIPIETISQSDTDDDSSEVMVVGYIKPPQDRTPEVVDLLGSDSDVIVQETSEQPQSN
ETPERSSPRVKLTMTSASHSSRRDSSDSDGSAYTPSPPPHSSRQASQDSDASSEKCSSSD
MSDAARRSSQPSRTSSSSSSSSSSPSSLTSSYYTSSSESESSDDNVKRKKARRKLTATER
NKRNAKKRPQRTNHKNRKLSNVQERKQSKRKSQSGKGVKSSKKPSEVAPEETQTDLNQPG
TSGTARNTRKRKMEVKRRTVSRESKRLKSVVSVIKVAGESSSRANVQSSHFSVVIRNNRD
CSDSDDDIPLNLTITKSSS