Genomic Position | scaffold5109:- 3480-11171 |
---|---|
See gene structure | |
CDS Length | 5772 |
Paired RNAseq reads   | 103 |
Single RNAseq reads   | 311 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013961 (3e-07) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | reverse transcriptase [Papilio xuthus] (0.0) |
Best NR hit (blastx)   | reverse transcriptase [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0006278 RNA-dependent DNA replication GO:0003964 RNA-directed DNA polymerase activity GO:0003723 RNA binding |
InterPro families    | IPR001878 Zinc finger, CCHC-type IPR013084 Zinc finger, CCHC retroviral-type IPR000477 Reverse transcriptase IPR005135 Endonuclease/exonuclease/phosphatase |
Orthology group | MCL10007 |
Nucleotide sequence:
ATGGCCTGCACGCCCATCAACATTCTTCAGGCGAACCTGAACCACTCCCCTGGTCCGCAG
GATCTTTGCCTGCAGGCCATGGCGGAGTGGTCCATCGAGGCGGCAGTGCTCTGCGAGCCG
TACTTCGTCCCCGATCGTCCGAATTGGGTGACGGATACGGATCGGTCTGTGGCGGTGGTC
GTCTCATCGGGTGTGCGCTCCTCTCCTCTTGCCGTTGTCGGTAGGGGGGAAGGGTATGTC
GCTGCTCGGTGGGGCGATCTCGTACTGGTGGGCGTCTATCTCGCCCCGAGGAAGCCCGTC
GCAGAGGTAGAAAAACTTCTCGACGAGGTCGGGGCGGAAGTGAGACGTGCGTCGCCGAGG
CAAGTCATCGTTCTCGGCGACTTCAATGCCCACAGTACGGCGTGGCAGTCGCGCGTCACG
GACTCTCGCGGAGAGGTGGTAGAGGAGTGGGCCACAGCGTTCGGCCTGTCACTTCTCAAC
CGGGGAAATGCCGTTACGTGCGTACGACCGCAGGGTGAGTCCGTAGTGGACTTATCGTTC
GCTACTCCCGCGGTCGCAACGCGAGTACGTAACTGGCGAGTTCTGGTTGAGGAGGAGACG
TTGTCGGACCACTCCTTTATCAGGTTCGAGTTGGCTCCACAAGGAGGCTCTTCGTTTCGC
CGTCGCGCCGCCGGGAGCACGTCTGCGTTCCCGCGGTGGTCTCTGACCAAGCTGGACAGA
GACATGGCGGTGGAGGCATCGATCGTCCAGGCCTGGACCATGCGAGTCGATCAGCCCGTT
GAGGTGGATGAGGAGGCGCGCAAGTTCCGCCGGTCCCTATGGCGGATCTGCGATGCGTCG
ATGCCCCGCGTCACGCAACGCCCTCCCAGACGCCAGGTGTATTGGTGGACGCCGGAGATC
GCGCAGCTACGCTCAGTCTGCGTGGTGGCGAGACGCCGGTACACCCGACAACGGAGGCAG
CATCCTCGCAACGAGGCCGATGAAAGTCGGCTTCGCGATGCCTACAAGGAAGCGAAGAGC
GAGCTTCGGCACGCTATTTGCAGGTCCAAAGAGTCGGCCCGCGAGGAGTTACTCGCGCGT
CTAGATGGAGATCCGTGGGGGCGTCCGTATCTCGGTGCTCGGAACAAGATCCGAGCCCAG
ACGGCCCCGGTCACGGAGAGTCTAGAGCCGGAGTTTCTGCGAAGCGTCGTGTGCGCCTTG
TTCCCCATGGAGGCCGCACACACGATGCCAGCGGACACTTCACGCGAGCCGGCCCGGTCG
GAGGTCATTCCGGCCGTCTCTCTGGAGGAGCTTGAGAGGTCTCTGTCGCCGCTGAAGGCC
AAACAAACCGCCCCCGGACCGGACGGCGTCCCCGGACGCGTCCTGGCCCTGGCCCTGGGC
GAGTTGGCCGAGTGGTACTTGGAGATCCTCAATGAGTGTCTAAGAACGGGTCGCTTTCCA
TCGTCTTGGAAAGAGGGGAGACTCGTTCTACTCCAGAAGGGAGGACGACCTGCAGACTCG
CCGTCTGCGTACCGTCCGATAGTGTTGCTAGACGACGCGGGGAAGCTCTTCGAGCGGATC
CTCGCGACTCGTGTCGTCCGACACATCAGCAGCACGGGGCCCGATCTGGCTCAGTCCCAG
TATGGTTTTCGGGGTGGAAGGTCTACCATAGACGCCATCCTGAAACTGAGGAGTCTCGCA
GATGATGCCGTGTCTAGGGGCGGAGTTGCGTTGGCGGTGTCCCTCGACATCACCAACGCG
TTCAACTCGCTACCCTTTGGCGTCATCGAAGAGGCCCTCAGGTACCATGGTCTGCCGGAT
TACATTCGGCGGACCATCGGGTCCTACCTCCGCGGACGGGAGATCTCGTTCGTGGGGGGC
GACGGTAGGTTGCATCGTCACGAGGTGCGCTGCGGTGTTCCGCAGGGGTCGGTCCTCGGG
CCTCTCCTGTGGAACTTGGGGTACGATTTCGTGCTCCGCGGCGCCCTCCCGACCGGGCTG
AGCGTCGTCTGCTACGCGGACGACACGCTCGTGTTAGCCCGAGGCGATGACCTGGCAGAG
GCGAAGGCGCGTGCCGAGGCGGGAGCCGCCTTGATAGTACGGCGCATCCAGATGCTCGGG
CTGAGGGTGGGCCTGGAGAAGACAGAGGCCCTCCTGTTCCACGGCCCTCGAGCAGGACCT
CCGACGGACGCCAGCATCAACATCTGCGGCGTCCGCGTCGAGCTCAGTCCCCGGATGAAG
TATCTGGGGCTGACTCTGGACGGAAGGTGGAACTTCCGAGAGCATTTTCGCGGGTTAGTC
CCGAAATTACTCGGGACGGCGAACGCACTCGGAAGACTTCTGCCGAATCTCGGTGGTCCG
AGCGCGACATGTCGGCGCCTGTACACCGGCGTGTTGCGTTCGATGGCGCTGTACGGAGCT
CCAGTGTGGGCCGGTGCCCTCACGAGGCCGAACGTGGCTGCGCTGCACAGAGTGCAGCGC
GTCATGGCTGTGAGGGTGGTACGGGGATACTGCACTGTCTCCCACGAGGCGGCTTGCGTG
CTCGCTGGAACGCCTCCCTGGGACTTGGACGCCCAGGTTCTGGCGGAGGTTTACCAGCAG
CGCGCTCGAGCTCGATCCCGAGGTACGAGTCCGGACCGGGATCGGGCGGCGGTGGTGGAG
GGTTGGCGGCGCTCCGCGCTCGCGTTGATCTTCCGTCGATGGAGGCGGCGGCTCTCTGAG
CCAGTGGCCGGGTTGCGCACCGTGGAGGCGATTCGTCCGCTCCTCAAGGAGTGGGTGGAC
CGTCGACACGGTTCCTTGACCTTCCGGTTGGTGCAGATCCTCTCGGGGCATGGCAGCTTC
GGGCGGTATCTGTGCCACATAGCCGGGAGAGAGCCGACGGCGGCGTGTCACCATTGCAGT
TGCATGGATGATACGCCCGACCATACTTTGGCGGAGTGTCCAGCGTGGGCGACGGAGCGT
CGTCAACTCACCACCGTGGTTGGCGCGGATCTCTCGTTGCCGGCAGTAGTTCAGGCTATG
GTCGGTAGCGAGAGGGCCTGGGCGGCGGTGGTCTGTTTCTGTGAGGTGGTCATCTCGCAG
AAGGAGGCCGCCGAACGAGTGAGGGAGGACAATCCCTCCTCGGCGCCCATGCGCCGACGA
AGGCTGGGTCGAAGGCAGCGGGCCTACGCCCGCGAAATGCCTCCCCAGGGCTGGCGCGCC
GATCTTGGTGTGCCAGTCATCTTGCTCCCCCGTCCGCTGAAAAGGGGACTCCGGGGGCAG
GATCCTTCACTCTGCCGAGTGGACTATATTCTGTGTTCGGCACAATCCCGCTCCCCAGTT
CCTCTGTACCAGAAGATCCCGGGGACGTGGGAACAAGGAGTGGTAGAGCCTGCTGCGGTC
TTCGGACTCCGGCTAGTAATGGGCTGGCTCGACCGGGTGTTGGTACGGGCGCGCCACTTC
TGGCGTTCCGCCTTCCGGTCCCCAGCTCTCCTGTATCAGGAGACTCCGGGGACACCGGAT
CTGTCACGTGTGACATTGCCGAGTGGACTCGTCTGCTCTCGGCACAACCCGCTCCCCAGC
TCCCCTGTATCAGGGGACTCCGGGGACGCGGGATCGGGCGGTGGGCGGTCTCCCAGACCA
CCCGCCGGTCAAACCGTAACCCTCATTGAGAGGACACGGGGGCTTCGGCCGCGAGGAGTA
AACCTCTTTAAAAAATCCCCAAATTCCCCTAGTTGCGGGGCGCGGCTAGGGGGTGCTTCT
CCGGGAGCGGCTGGGGGGTATCTCAGCCACCTAGCGACCAAGGGGTTCCTGCCCCCGAGG
CAGGAGGGTACCGGTCGCGATGCGGCCGGAGAATCCCTCACCGGTTCGCCGGTCAGCCCC
TCGTATTCTGGGGGGGGCAAAAACCGCCTTCGGGGTCCATTGGTGGACGCCCGACGTAGA
GGTGCAGTGGGCACGGACCTAGGCTCAGACAACGGACAAGATTCTGCTAGTGATTTGGAT
ATAGCTGGTAAGAGTAAAGAAGCGGCGGGCACCTCACGTGTACGCGGACGAGGGCGACCT
CCTACTACCGGGGCGTACGTAGGATTAGCAAAGGCCAAGGAGGCTCTCAACCGCCAGAAG
CGTGAGGAGCTCTTGCTGGAGACTGAGGAAGAAGTGACGCGTACGGCACGCAAAACGGAA
GCGGCTTTGCCCTCTGTCAAGAAGATGCCTATCGCTTTACTCAGCAAAGAGGTGGACAAG
GCTGTCGAAGCGATCCTTGAGGTCGCCATTAAGTCTAAAAACCTTAAAGGCGGCTGCATC
AGGTCCTTAAAGGCTTCGTCGGCCCTAATCAGGGAGGCAAAGGAAGTTCTTCTTTGCCGA
ACTAGCTCGGAGGAGATTGCCGTATTGCAGTCTCAGCTGGAGGAGGAGAAGAGAAAGAAC
GCTCGCCTTCAGCAAGAACTGGTTGAGCTGAGAGAGGGGCAAGCTCGCTTGCGAGCGGAC
ATGGACCAGTTGGCCATTGCCCCTCCCACGGTTGTAGCGGAGAGGAGTTTCGAGGAGCTT
CGTGCCGGAATGTTGCTTGACATAGGCAATATGATGGATGCGAAGCTCCGCGACGTCGAG
AATAAACTCCTTAAGGATAGGCGCACGCGGCAACCAACTGCTTCTGACAATAGGCCTTCA
GTACCAACGTCAGAAGTAGCGGAACACTACGCGGACCGTGAACCGATCACAGCGTCGGCA
CCTGAAGCCAGTAACAAAACGGCTTCAGGCAAACAGCAAGGCGCCATTAAACCAGGGCAA
CCAACATCCGCCCGGTTCTTACCCCCGCCACCGGCTTCCATGGCCGAAAGGTGGACGGAG
GTTGTTAAAAGGAAGGGCAAGAGCAAGGAACAACCCGGCCCTCGCCCCAAGAGTGCTGCT
GTCCCATCTCGGACGACAAAAGGAGCGGCTGCAGTTGCTCAGTCTGTGCCCCTACAAGAC
CGGGGGCACAAAAAAGTAAAGAAGAAGGGAAGGAGGAGAGAAATTCGTCCCCAACGCTCG
CCGGCAGTGGTCATCACACTGTCACGCGAGACACAAGAGCGCGGGATAAAATACGAGGAC
GTCCTCAAGAAAGCGCGGGCGAGACTCGATTTGGCGGAGATAGGGTTGCCTATGGGTCTC
GTCTGCAAGAAGACGGCAACGGGGGCCCGTATGTTCGAGCTCCCGGAGAGTGCGGGTGAG
GGAACAGCTGATCTCCTCGCACGGAAACTCCAAGAGCTGGCTCCTGAAGCGAAGATCGCC
AGGCCCATACAGTGTGCGGAACTGCGCATTTCAGGTCTGGACGACTCGGTCGTGAAGGAG
GACGTCCTCGCAGCCGTTGCACGGCAGGGAAGCTGCTCAGCCGAGCATATCAAGGTCGGG
CAGGTGCGGTTTCGAGGAGACTTCGGCACCGGCGCAGTCTGGGTGAAGTGCCCTCTCAAA
GCCGCCAAGACCCTCGCAGATGCTGGTCGGCTGTTAGTCGGTTGGTGCTCGGCGAGGGTG
CAGACACTCGAGCCTCGCCCAATGCGATGCTTCCGGTGCCTGGAGATAGGACACACTGGC
ATGCGGTGCCCGTCAACCACCGACCGCAGCGGTCTGTGCTTCCGCTGCGGCGGTGAGGGG
CATACGGCCAGTGACTGCAGGAAGGAGCCGCATTGCCTGGTCTGCGCAGCAGCTGGAGCT
CCCGCAAACCATATGGTGGGTGGGAAGAACTGTCACCCGCCTAAGAGAAGGAAGAAGGGT
AAGGGGCCCATAAACACCTCGGCCCCGACCACTAAACCTGCCGGTACGGAGGAAGCTACA
ACAACACTCTAA
Protein sequence:
MACTPINILQANLNHSPGPQDLCLQAMAEWSIEAAVLCEPYFVPDRPNWVTDTDRSVAVV
VSSGVRSSPLAVVGRGEGYVAARWGDLVLVGVYLAPRKPVAEVEKLLDEVGAEVRRASPR
QVIVLGDFNAHSTAWQSRVTDSRGEVVEEWATAFGLSLLNRGNAVTCVRPQGESVVDLSF
ATPAVATRVRNWRVLVEEETLSDHSFIRFELAPQGGSSFRRRAAGSTSAFPRWSLTKLDR
DMAVEASIVQAWTMRVDQPVEVDEEARKFRRSLWRICDASMPRVTQRPPRRQVYWWTPEI
AQLRSVCVVARRRYTRQRRQHPRNEADESRLRDAYKEAKSELRHAICRSKESAREELLAR
LDGDPWGRPYLGARNKIRAQTAPVTESLEPEFLRSVVCALFPMEAAHTMPADTSREPARS
EVIPAVSLEELERSLSPLKAKQTAPGPDGVPGRVLALALGELAEWYLEILNECLRTGRFP
SSWKEGRLVLLQKGGRPADSPSAYRPIVLLDDAGKLFERILATRVVRHISSTGPDLAQSQ
YGFRGGRSTIDAILKLRSLADDAVSRGGVALAVSLDITNAFNSLPFGVIEEALRYHGLPD
YIRRTIGSYLRGREISFVGGDGRLHRHEVRCGVPQGSVLGPLLWNLGYDFVLRGALPTGL
SVVCYADDTLVLARGDDLAEAKARAEAGAALIVRRIQMLGLRVGLEKTEALLFHGPRAGP
PTDASINICGVRVELSPRMKYLGLTLDGRWNFREHFRGLVPKLLGTANALGRLLPNLGGP
SATCRRLYTGVLRSMALYGAPVWAGALTRPNVAALHRVQRVMAVRVVRGYCTVSHEAACV
LAGTPPWDLDAQVLAEVYQQRARARSRGTSPDRDRAAVVEGWRRSALALIFRRWRRRLSE
PVAGLRTVEAIRPLLKEWVDRRHGSLTFRLVQILSGHGSFGRYLCHIAGREPTAACHHCS
CMDDTPDHTLAECPAWATERRQLTTVVGADLSLPAVVQAMVGSERAWAAVVCFCEVVISQ
KEAAERVREDNPSSAPMRRRRLGRRQRAYAREMPPQGWRADLGVPVILLPRPLKRGLRGQ
DPSLCRVDYILCSAQSRSPVPLYQKIPGTWEQGVVEPAAVFGLRLVMGWLDRVLVRARHF
WRSAFRSPALLYQETPGTPDLSRVTLPSGLVCSRHNPLPSSPVSGDSGDAGSGGGRSPRP
PAGQTVTLIERTRGLRPRGVNLFKKSPNSPSCGARLGGASPGAAGGYLSHLATKGFLPPR
QEGTGRDAAGESLTGSPVSPSYSGGGKNRLRGPLVDARRRGAVGTDLGSDNGQDSASDLD
IAGKSKEAAGTSRVRGRGRPPTTGAYVGLAKAKEALNRQKREELLLETEEEVTRTARKTE
AALPSVKKMPIALLSKEVDKAVEAILEVAIKSKNLKGGCIRSLKASSALIREAKEVLLCR
TSSEEIAVLQSQLEEEKRKNARLQQELVELREGQARLRADMDQLAIAPPTVVAERSFEEL
RAGMLLDIGNMMDAKLRDVENKLLKDRRTRQPTASDNRPSVPTSEVAEHYADREPITASA
PEASNKTASGKQQGAIKPGQPTSARFLPPPPASMAERWTEVVKRKGKSKEQPGPRPKSAA
VPSRTTKGAAAVAQSVPLQDRGHKKVKKKGRRREIRPQRSPAVVITLSRETQERGIKYED
VLKKARARLDLAEIGLPMGLVCKKTATGARMFELPESAGEGTADLLARKLQELAPEAKIA
RPIQCAELRISGLDDSVVKEDVLAAVARQGSCSAEHIKVGQVRFRGDFGTGAVWVKCPLK
AAKTLADAGRLLVGWCSARVQTLEPRPMRCFRCLEIGHTGMRCPSTTDRSGLCFRCGGEG
HTASDCRKEPHCLVCAAAGAPANHMVGGKNCHPPKRRKKGKGPINTSAPTTKPAGTEEAT
TTL