| New model in OGS2.0 | DPOGS202460 |
|---|---|
| Genomic Position | scaffold581:+ 60803-64832 |
| See gene structure | |
| CDS Length | 2256 |
| Paired RNAseq reads | 7354 |
| Single RNAseq reads | 24466 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009978 (2e-14) |
| Best Drosophila hit | Nopp140, isoform B (8e-18) |
| Best Human hit | nucleolar and coiled-body phosphoprotein 1 (3e-14) |
| Best NR hit (blastp) | PREDICTED: similar to Nopp140 CG7421-PB, isoform B [Apis mellifera] (2e-19) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC030773 [Tribolium castaneum] (2e-17) |
| GeneOntology terms | GO:0005515 protein binding GO:0007049 cell cycle GO:0005525 GTP binding GO:0005730 nucleolus GO:0005524 ATP binding GO:0006364 rRNA processing GO:0007067 mitosis GO:0005634 nucleus GO:0005737 cytoplasm GO:0000166 nucleotide binding |
| InterPro families | IPR017859 Treacle-like, Treacher Collins Syndrome IPR007718 SRP40, C-terminal |
| Orthology group | ND |
Nucleotide sequence:
ATGAGTGTTTTACCAGAAAATATTAAGGCTGAGGCCAATTCAATTATTCATCAATATTTA
AATAGTATAGACAAATCCTTAGCGAGTAACTTTTTAAAAATAACAAAAGCGAAACCCAGA
GCTAAGAATCTGCCGTCTTTTGTTGATATACTTCAACAATTCAAAAGCCAGCAAAAGCCC
AACAAAAAACAAGCTGAGAGCTCTGATGACTCTAGCGAAGACGAAAAGCCTAAAAAGCCT
GTTGCCCAAATAAATGGTAATGCCCAACAGAAAAAGAAGGAATCCTCTGATTCAGATAGC
TCGGAAGATGAGAAACCTCAAAGCAAACCTGCACCCAAGTCTAACAATGTTGCACCGAAA
GCTGCTCCCAAGAAAGCAGAATCATCAGATGACAGTGACAGTAGTGATGATGGTTCAAAG
AAACCAGTAGCTCAGCCGGTGAAACCTCAAGCAAACAAGGCAGCTCCTAAAGTGGCTAAA
CAAGAATCTTCTGATGATAGCTCAGACAGTGAAGATGAAAAGCCAGCAACAAAACCTACC
CCAGTCAAACCAGCTCCAGCTAAAGCCACACCAGCTAAAGCTACTCCAGCTAAAACTCCT
CAAAAGAAAGCTGAATCTTCGGACAGTGACAGCAGTGATGATGAAGCTAAAAAGCCAGCT
CCTAAAGCAACCCCAGCCAAGAAACCTGTTGCTAAACCATCAAAAGCAGAAGAATCGTCA
GATGACAGTGATTCGGATGATGCTACCAAACCACCTCCAAAGGCTGCCACTGCCAAGCCC
ACACCAAATAAACCAGCAGTTAAGGCTACACCCAAAAAACAAGAATCATCTTCTGACGAC
AGCAGTGAAGATGAGAAACCCCAACAGAAAGCTTTCCCCAAACTGCAAGCGGCAGCTGCC
AAACCAGTTGGCAAGGTCAACAAGAAGCAGTCATCCTCAGAAGATAGTGATGAAAGTAGT
GAAGATGAAAAAGCCAAGGCTGCAGCGAAGCAACCAGCTAAACCTGCAGCCAAACCAACC
CCAGCCAAGAAGAAACAGGAATCTTCTTCTGATGATAGTGATGATGAACCCCCAAAACCG
GCCCAAAAATCTCCAGCCCCAGCCAAACCTGCAGCAAAAGCAAAGGCAGAATCTTCAGAC
AGCGATGACAGCAGTGACGATGAACCTAAAGCTAAGCAAGCTAAAGTAGCAACCCCGGCT
AAACCTGCAAAGGAAGATTCTTCTGATGACAGTGATGAAGAGCCACCTAAGAAGGTTCAA
AAACCTGGTGCTAAACCAGCAGCCGCACCTAAAAAAGCACCATCAGACAGTGACGATAGT
AGTGAAGAAGAACAAAAGAAGCCACCGTCTACTCCAAAAGCCAAGCCAAAGCAAGAGTCG
TCTGATGATGATGATAGTGATGATGAAGCACCAACTGAAGTACAGAAGAAGGAAAATAAT
CAGTCTGAAAACGTCAAAGCTGGCAAGAAAAGGAAAGCCTCTGAAAATGAAGCAGAGCCA
ACACCCGCCAAGAAACCATATAGCAATTTTGTAAAGGGGACCAATTGCTCATCAACACCC
AGTGACAAAGGCCCAGAAAGTAAGCCAACTCCCTTCAGGAGAGTTGTCACAGAAAAAGTT
GAAGTGGATCCTAGACTTAAAGACAATTCATTTGAAGCTAAGGAAGGTGAGGATGACGCC
GAAGAAGACGATGAACTCAACAAATCTGGAGGCGGAGGTGGACGAGGGGGAATGAACCGT
GGAGGCTTCCGCGGCCGGGGAGGGTTTAACGATAGAGGGGGCAGGGGTGGATTCGGCGGC
AGGGGAGGCCGCGGCGGCTTTAATGATAGGGGAGGCCGTGGCGGATTTAACGATAGAGGA
GGTCGGGGAGGTTTCAGAGGCCGTGGGGGATTCAACGATAGAGGGGGTAGGGGAGGACGA
GGAGGGTTCGATCGTGAAGGTCGTGGTGGAGGTCGTTGGGGAGACAGAGGTGGGAGGGGA
GGACGGGGTGGCCGCGGTGATAGACACTCCTGGGGAGGGGACAGGGGGGGATTCAACAAA
GGCGGGTTTAATAACAGAAAGAGTTTCGGGGACGGCGGCGACCAACAAAATAAGAAAGTT
TACGGAGCCCGCGGCTCGTGGGGCGAGCGCGCTAATCAAGACTTGAAGCACACACGCGGC
AAGTCATTCAAACACGAGAAAACAAAGAAAAAACGCGGTTCCTACCGGGGTGGCGCCATC
GACACCGGGGTCCATTCCATTAAGTTTGAGGATTGA
Protein sequence:
MSVLPENIKAEANSIIHQYLNSIDKSLASNFLKITKAKPRAKNLPSFVDILQQFKSQQKP
NKKQAESSDDSSEDEKPKKPVAQINGNAQQKKKESSDSDSSEDEKPQSKPAPKSNNVAPK
AAPKKAESSDDSDSSDDGSKKPVAQPVKPQANKAAPKVAKQESSDDSSDSEDEKPATKPT
PVKPAPAKATPAKATPAKTPQKKAESSDSDSSDDEAKKPAPKATPAKKPVAKPSKAEESS
DDSDSDDATKPPPKAATAKPTPNKPAVKATPKKQESSSDDSSEDEKPQQKAFPKLQAAAA
KPVGKVNKKQSSSEDSDESSEDEKAKAAAKQPAKPAAKPTPAKKKQESSSDDSDDEPPKP
AQKSPAPAKPAAKAKAESSDSDDSSDDEPKAKQAKVATPAKPAKEDSSDDSDEEPPKKVQ
KPGAKPAAAPKKAPSDSDDSSEEEQKKPPSTPKAKPKQESSDDDDSDDEAPTEVQKKENN
QSENVKAGKKRKASENEAEPTPAKKPYSNFVKGTNCSSTPSDKGPESKPTPFRRVVTEKV
EVDPRLKDNSFEAKEGEDDAEEDDELNKSGGGGGRGGMNRGGFRGRGGFNDRGGRGGFGG
RGGRGGFNDRGGRGGFNDRGGRGGFRGRGGFNDRGGRGGRGGFDREGRGGGRWGDRGGRG
GRGGRGDRHSWGGDRGGFNKGGFNNRKSFGDGGDQQNKKVYGARGSWGERANQDLKHTRG
KSFKHEKTKKKRGSYRGGAIDTGVHSIKFED