New model in OGS2.0 | DPOGS211156  |
---|---|
Genomic Position | scaffold540:+ 42060-44273 |
See gene structure | |
CDS Length | 1569 |
Paired RNAseq reads   | 245 |
Single RNAseq reads   | 915 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003142 (0.0) |
Best Drosophila hit   | CG6197 (6e-123) |
Best Human hit | pre-mRNA-splicing factor SYF1 (7e-109) |
Best NR hit (blastp)   | PREDICTED: similar to XPA-binding protein 2 [Tribolium castaneum] (7e-154) |
Best NR hit (blastx)   | XPA-binding protein, putative [Pediculus humanus corporis] (1e-147) |
GeneOntology terms    | GO:0005488 binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus GO:0006911 phagocytosis, engulfment GO:0071011 precatalytic spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071013 catalytic step 2 spliceosome |
InterPro families    | IPR011990 Tetratricopeptide-like helical IPR003107 RNA-processing protein, HAT helix |
Orthology group | MCL16141 |
Nucleotide sequence:
ATGCCTAGAATATGGATGGACTATTGTACATTTTTGACTGATCAGTGGAAAATTACCGCT
ACAAGAAAAGCATTTGATTCTGCTTTACGGGCTTTACCAATTACACAGCATCACAGAATA
TGGCCCCTCTATTTAAATTTCTTGAAAAAGCATAATATTCCAGAAACTGCTGTTAGGGTA
TTCAGACGCTACCTAAAGTTGTGTCCCGAAGATACTGAAGAATATATTGATTATTTAATA
TCTATAGAAAAATTAGATGAAGCTGCTTTAAAATTAGCTCAACTTGTAAACAATGAGAAT
TTTCAATCCAAACATGGAAAATCCAACCACCAGCTTTGGAATGAATTGTGTGAACTAATA
TCCAAAAACCCAGACAAAATTCATTCACTTAATGTTGATGCCATAATAAGAGGTGGACTT
CGTCGCTACACTGACCAGCTGGGTCATCTGTGGAATTCACTAGCTGATTACTATGTTAGA
AGTGGGTTATTTGAGAGAGCCAGAGATATATATGAGGAAGCCATTCAGACTGTCACAACA
GTAAGAGATTTCACCCAAGTCTTTGATGCCTATGCTCAATTTGAAGAGTTGAGTTTGAGT
AAAAAGATGGAAGAAGTTGCAAAGAAACCCAACCCCACTGAGGATGAAGATATTGATTTA
GAATTACGTCTTGCTAGGTTTGAATATTTGATGGAAAGAAGATTGTTACTGCTAAATTCA
GTACTATTAAGACAAAATCCACATAATATTGCTGAATGGCACAAAAGAGTAAAGCTCTAT
GAAGGTAAACCTCATGAAATCATAGATACATATACAGAAGCTGTGCAGACAGTAGATCCA
AAATTAGCGGTAGGAAAACTTTATACACTGTGGGTTGGTTTTGCAAAATTTTATGAGAGC
AATGACCAAATTGATGATGCAAGGTTAATTTTTGAGAAAGCGACCCAAGCTGCAGAAATA
TATGGCGTACCCAAAACGCGACAAATATATGAAAAAGCAATCGAGACTCTACCAGATGAA
AAAGCTAGAGAGATGTGCTTGCGATTTTCGGAAATGGAAACGAAACTTGGGGAGATCGAC
AGAGCTCGTGCCATATACGCTCACTGTAGTCAGATGTGCGATCCAAGGATTACGACAGAA
TTCTGGAATACGTGGAAAGAATTTGAAGTAAGGCATGGTAATGAAGATACTATGAGGGAA
ATGCTTAGAATTAAGAGAAGTGTACAAGCTACTTATAACACGCAAGTCAATATGATGTCA
GCCCAAATGCTAGGCTCAGCTGCTCAGGCTGCGGGTACAATATCGGATCTTGCACCCGGA
ATGAAGGACGGCATGAGATTGTTGGAGGCTAAAGCTGCCGAAATGGCTGTCCAAAGCAAG
GGCAATATATTGTTCGTCAGAGGTGAAACACAAGGTCTCAAAGAAAACGATAAAGTTGTT
AATCCTGATGAAATTGATATTGATGACGAAGAATCTGATAATAGTAATGATGACGAGGAA
GTTGCACCTGTACAGAAAAAGGAAATTCCTGCAGCAGTGTTTGGAGGCTTGGTTCCAGAA
AATCAATAA
Protein sequence:
MPRIWMDYCTFLTDQWKITATRKAFDSALRALPITQHHRIWPLYLNFLKKHNIPETAVRV
FRRYLKLCPEDTEEYIDYLISIEKLDEAALKLAQLVNNENFQSKHGKSNHQLWNELCELI
SKNPDKIHSLNVDAIIRGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTT
VRDFTQVFDAYAQFEELSLSKKMEEVAKKPNPTEDEDIDLELRLARFEYLMERRLLLLNS
VLLRQNPHNIAEWHKRVKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYES
NDQIDDARLIFEKATQAAEIYGVPKTRQIYEKAIETLPDEKAREMCLRFSEMETKLGEID
RARAIYAHCSQMCDPRITTEFWNTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMS
AQMLGSAAQAAGTISDLAPGMKDGMRLLEAKAAEMAVQSKGNILFVRGETQGLKENDKVV
NPDEIDIDDEESDNSNDDEEVAPVQKKEIPAAVFGGLVPENQ