New model in OGS2.0 | DPOGS215413  |
---|---|
Genomic Position | scaffold211:- 12988-16798 |
See gene structure | |
CDS Length | 1830 |
Paired RNAseq reads   | 330 |
Single RNAseq reads   | 956 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012374 (0.0) |
Best Drosophila hit   | ninaG (4e-68) |
Best Human hit | choline dehydrogenase, mitochondrial precursor (4e-35) |
Best NR hit (blastp)   | PREDICTED: similar to ENSANGP00000029571 [Nasonia vitripennis] (3e-123) |
Best NR hit (blastx)   | PREDICTED: similar to ENSANGP00000029571 [Nasonia vitripennis] (7e-96) |
GeneOntology terms    | GO:0005575 cellular_component GO:0050660 FAD binding GO:0006066 alcohol metabolic process GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO:0046154 rhodopsin metabolic process GO:0007601 visual perception GO:0001523 retinoid metabolic process GO:0006810 transport GO:0016491 oxidoreductase activity |
InterPro families    | IPR012132 Glucose-methanol-choline oxidoreductase IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal |
Orthology group | MCL17447 |
Nucleotide sequence:
ATGACACTGTATACATTATTTGTTAGTGTTTTAGTTGTATGCGTGTCTTATCTCGTGTAT
CAAAAATACTCCAACGTAAATGTCAGCTTTGTACAGAAACCCGAAAAGCGATATGATTAC
ATCATTGTCGGCGCCGGCACCGCTGGTTGCGTTCTGGCTTCCCGACTATCTGAAGATCCA
AACGTCAAAGTGTTACTTATTGAAGCTGGAGACCACATGGGTTATTTCACTAAAATACCG
CTGACCTCAACTGCCGCACAGCTAGGACCTAATGATTGGTCTGTACGAACTACGCCACAG
AAATATTCCTCCTTTGGGCTCATTGATCGGACCCAAATAATCCCACGCGGGAGAGGTCCA
GGAGGATCTGGACAGATAAATTTCCTGCTTCACGGATTTGGTTTACCCGAGGATTACAAT
CGTTGGTCCCGCTTGGGCTTTAAGGGGTGGACGTTGGAAAACTTAAAACCATATTTCATT
AAAGCTTTCGGGACCTACAAAAGCGAATTCGACTCAGATATGTGTCCACCCAAAGGACAA
TGTTCGGAGGCTCCGATGAAGCTGAAATTGATCGATGACAGTAACGAACTGATGACCATC
TTCAAACAAGCCTCCTTGAGTCTCTCTGACAAAACAACACTGTTTAGAAGAGCCACGGCG
TCCATTAAGGGAGGATCAAGATATCAGACATACAGCGCCTATTTAAAACCAGCACTCAAA
AGACCAAATCTACATGTCCTACTTAAAACACAGGCAATATCAATACGTTTTGAGGATCAG
AAAGTTTCGTCTCTTTACATTTTGGAAGACCATCGAAATCTGGACAATATATTTGTAAAC
AAAGAAATAATACTTAGCGCCGGTTCCATTAAAACACCACAAATCTTAATGCTGTCTGGT
ATAGGACCAAGGAATTTAATGAGAAGGCTAAGGCTAGAATTGGTATCAGACAATGAGTTC
GTGGGTCGCAACCTGCACGATCATCTTAATGTGCCTATCTATGTCAGCATAAAAAAACCT
ATCAGTATTACTTTAGCCAAGGTATTTAGTGCCAGTACCCTTTGGAATTACTTTTGGAAC
GGAGACGGTTATTTAGCTTTTCCTCCTGTAGCTGGTGTGGAATATCGTAACTCTTCAGCT
CTGATGCTGTTCTCAATGGGATCTTCCAGTGAGAGATTGTTACGAGACTTGTCCAACTAT
AAACCTCAGGTTTTCCGTGAAACATTTCCGTTCCACAACGACACCAGTAAAGAAGGCTTC
ATGTGGCTGGCGTCCTGTGTGGCACCTCGGAGTCGTGGTCAAGTTACAGTCACGGACCCG
AGCACTAGTGTTCCGCCGGAAGTTGACCCCAACTACCTTCATCGAGAATATGATGTACGA
TGCATTATTAGAGCGATCAGACGAGCGGAAAGATTGGTATCGACAAAATCATTCCGAAGT
ATCGGAGCGAAAATCCACTGGCCGAGATCAGAGCGCTGCTTACCGTTGTGGACCTACACG
AAGTTGGAGCAACTCGGACTGAGGCGAAGAAAGAAGATAAAAGTACCAGGAGAGAAGCCA
CGCAAGGAGATACCAAAGCAGAAGCCTCGGAGTCCCCCTGACGCATACCTGGAGTGTATC
ATCCGGGAGGTAGGAGTGACGGGACACCACGCGGGGGGAACGTGCGCCGGGGGAAGGGTT
GTCGACGATCTACTCCGTGTCAAAGACGTCGAAGGTCTCCGTATAATGGACGCGAGTGTT
TTTCCCGCGCCAACATCGCTGTATCCAAACTCAGTAATAGTCGCGATGGCGGAAAAAGCA
GCAGACTTAATAAGGAATACTGTAACGTAG
Protein sequence:
MTLYTLFVSVLVVCVSYLVYQKYSNVNVSFVQKPEKRYDYIIVGAGTAGCVLASRLSEDP
NVKVLLIEAGDHMGYFTKIPLTSTAAQLGPNDWSVRTTPQKYSSFGLIDRTQIIPRGRGP
GGSGQINFLLHGFGLPEDYNRWSRLGFKGWTLENLKPYFIKAFGTYKSEFDSDMCPPKGQ
CSEAPMKLKLIDDSNELMTIFKQASLSLSDKTTLFRRATASIKGGSRYQTYSAYLKPALK
RPNLHVLLKTQAISIRFEDQKVSSLYILEDHRNLDNIFVNKEIILSAGSIKTPQILMLSG
IGPRNLMRRLRLELVSDNEFVGRNLHDHLNVPIYVSIKKPISITLAKVFSASTLWNYFWN
GDGYLAFPPVAGVEYRNSSALMLFSMGSSSERLLRDLSNYKPQVFRETFPFHNDTSKEGF
MWLASCVAPRSRGQVTVTDPSTSVPPEVDPNYLHREYDVRCIIRAIRRAERLVSTKSFRS
IGAKIHWPRSERCLPLWTYTKLEQLGLRRRKKIKVPGEKPRKEIPKQKPRSPPDAYLECI
IREVGVTGHHAGGTCAGGRVVDDLLRVKDVEGLRIMDASVFPAPTSLYPNSVIVAMAEKA
ADLIRNTVT