| New model in OGS2.0 | DPOGS210730 |
|---|---|
| Genomic Position | scaffold4207:- 6231-9432 |
| See gene structure | |
| CDS Length | 783 |
| Paired RNAseq reads | 3071 |
| Single RNAseq reads | 9379 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006260 (8e-47) |
| Best Drosophila hit | CG17838, isoform D (2e-78) |
| Best Human hit | heterogeneous nuclear ribonucleoprotein Q isoform 1 (2e-49) |
| Best NR hit (blastp) | GA27045 [Drosophila pseudoobscura pseudoobscura] (3e-89) |
| Best NR hit (blastx) | PREDICTED: similar to CG17838-PE, isoform E [Apis mellifera] (1e-85) |
| GeneOntology terms | GO:0030530 heterogeneous nuclear ribonucleoprotein complex GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003676 nucleic acid binding GO:0071011 precatalytic spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | ND |
Nucleotide sequence:
ATGACATTGGCCTCCGCCTCGAGAATGCTCACTGCCGGACTCGTTGAAGTCATTATATAT
AGTTCGCCCGATGACAAGAAGAAAAATAGAGGATTTTGTTTTTTGGAATACGAGTCTCAC
AAAGCGGCGTCACTAGCCAAGCGTCGGCTGGGCACCGGCAGGATTAAAGTTTGGGGCTGT
GATATTATAGTGGACTGGGCGGACCCGCAGGAGGAACCCGACGAGCAGACCATGAGCAAA
GTGAAGGTGTTGTACGTTCGGAACCTGACCCAAGAAATCACAGAAGAAGCGCTTAAAGAA
GAATTCGAACGTTATGGAAATGTAGAACGAGTTAAGAAAATTAAGGATTACGCTTTCGTA
CACTTCGAAGACCGGGATTGTGCCGTTAAGGCGATGCAGGAGATAGACGGCAAGGAGCTG
GGTGGAGCCCGCCTCGAGGTGTCGCTGGCCAAGCCACCCTCGGACAAGAAGAAGAAGGAG
GAGATACTGAGGGCGAGGGAGAGACGCATGACGCAGATGATATACGGACGGGGCGGCTGC
TCGCCGGTGCACGGGGCGCTCCGGGGCCGCACGCCGCAGCCGCAGCCGCGCCCGCCGCAG
GCCCGCGGGGACTACGATTATGATTACGACTATTACGGGTACGGGGATTACCGAGGTGGC
TACAATGAGCCATTTTACCGGTACGATGAGTTCTATTTTGATTACGCGGGGCCACCGCAA
CCGTCCGCCGTCCGCCAGCCTCCCAACAGAGCGCAGCCGGTGGGTCCCACACACACTAAC
TAA
Protein sequence:
MTLASASRMLTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGC
DIIVDWADPQEEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERVKKIKDYAFV
HFEDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKKKKEEILRARERRMTQMIYGRGGC
SPVHGALRGRTPQPQPRPPQARGDYDYDYDYYGYGDYRGGYNEPFYRYDEFYFDYAGPPQ
PSAVRQPPNRAQPVGPTHTN