| New model in OGS2.0 | DPOGS204559 |
|---|---|
| Genomic Position | scaffold1545:+ 20619-33006 |
| See gene structure | |
| CDS Length | 2103 |
| Paired RNAseq reads | 228 |
| Single RNAseq reads | 555 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004329 (6e-54) |
| Best Drosophila hit | ND |
| Best Human hit | collagen alpha-1(IX) chain isoform 1 precursor (3e-19) |
| Best NR hit (blastp) | PREDICTED: similar to Collagen alpha-1(IX) chain precursor [Apis mellifera] (3e-60) |
| Best NR hit (blastx) | collagen alpha-1 precursor, putative [Pediculus humanus corporis] (1e-22) |
| GeneOntology terms | GO:0046872 metal ion binding GO:0005578 proteinaceous extracellular matrix GO:0005576 extracellular region GO:0007155 cell adhesion GO:0005198 structural molecule activity GO:0051216 cartilage development GO:0003417 growth plate cartilage development GO:0001894 tissue homeostasis |
| InterPro families | IPR008160 Collagen triple helix repeat IPR003129 Laminin G, thrombospondin-type, N-terminal IPR008985 Concanavalin A-like lectin/glucanase |
| Orthology group | MCL39849 |
Nucleotide sequence:
ATGGATGTATTCTGGGTTATTTTCCTTCTTTTGGGAGCGTTATTTAAACACGGAAGCAAT
GGAGATGCAGAAACAGTTACAGCGTCTCCGTTAAACGCCTGCCAGTCACTTCGTCCGGGC
GACATAGACTTCCAATCAGTGGATCTGATAGCGGTGTACCGTTTGGACGGAGCTGATACA
ACAGGGGTCACCTTGGTCCAGGGCTCTCAGGACCTGCAGAGGGCGTACCGCGTTGGGGAT
GGAGCGAATCTTACTTTGCCTTTACGCGAGGCTCTACCAGCGGGTTTGCCTTCAACGTTC
ACTATAACTTCTACCTTCAGAACAAACAATCGCCGACCGTGGAGTCTTATCAGAGTTCGT
TCTACTTCTCTTCTTTTCTCTATAACTCTCTTACCAAATGTTAAGAAGATGGCCGTTTTC
GTTCAGGGATCACGTGTTGTCTTCTCTACGCCCACACTGTTCAAGCCGTTCTGGCACAAA
GTTCATATAGCTATAGACAACGATACTGTACACGCGGCCATAGACTGTAATGAGTTGGAG
CCGGAATCAATAGGTGGATGGGACTTTGATAACGCGACCAGCATCAGTATCGTCTCCAAC
GATGATGGAACCCCAGCTCCTGTAGACCTCCAATGGCTGTCATTGAGTTGCAATCGCTAC
AACATTACAGAAGACAGTTGTGAAGAAATCGAAATACCGGAGTCACTTATCGCAACCGTC
ACCCCTCCAATCGTAACACCGGGAGCAAACGACTTTCCTCTTGTATGTAATCAAACATGT
CCACCAGGTCCAGTGGGTCCGCCGGGGCCACCGGGAGAGATTGGTCCTCTTGGGTACACG
GGACTGCCAGGGAAACGAGGTGTGGACGGGCCTCCAGGCCCCCTAGGTCCGACGGGACCT
AAAGGAGAAAAAGGAGACATAGGTCCCCCGGGCTCTGCAAGCAATGTCTCCGTGATTGGC
CCGCCAGGGGTACCTGGGAGAAAAGGTTCCAAAGGTGACAAAGGAGATTCGGGAGAAAAA
GGTGATAGAGGTGATGTGGGCCTGGTGGGCCTGGCTGGAGTCCCCGGTGTCGATGGGAAG
GATGGTCCACCAGGTCCCGTCGGTCCTCCAGGGGCTCCCGGTGAACCTGGCCCTGTGGGC
CCCCCAGGACCCGCCAGTAAAGGATTTCTTCCTCTTGTGCAAGGTAGTAAGGGCGAGCAA
GGAATTCCGGGGGAGCCTGGTAGAGATGGCTACCCCGGAGTGAGAGGTTTACCAGGATTA
GATGGAACACCGGGAAGCCCGGGTATCCAAGGGATGCAAGGGTTACCTGGATTGCCCGGA
GAGAGAGGCTTGATTGGTCTTCCGGGTACTCCGGGAGAAATGGGCCCTGAAGGTCCAGCG
GGACCCCAAGGTCCGCCAGGACTTCCAGGACCTGCCGGTCCTCCAGGTGTGAGTACATCA
ACAGCTGGTGTTACCGTTCCAGGCCCTCCAGGGCCACCGGGTTTAATGGGTCTGAAAGGT
GAACAAGGATTCCCAGGATTGCCAGGGCGAGATGGCTTAGACGGTATCCCTGGGCTACCC
GGGCAGAGGGGTCCTCCAGGGCCCCCCGGTTCACTTAGCTTAGTACAAGAACAACGTCCA
TCATTATCAGAAAACGACGTGAGAAACATCTGTGAGGACATAATAAAAGTGCGTCTGGCT
GACTTTTCATCGGGTCTTGTGATGCCAACTGCGAAACCGGGACGCAGAGGCCCCCCAGGA
CCGCCGGGGGCACCAGGGAGCCCCGGTTCCGTGGGCGAAACAGGACCGATGGGTCCCAGG
GGGTATCCGGGTGAAACAGGCGAACCTGGTCGACCAGGATATCCAGGACCCAGCGGCGAC
AAAGGAGACAAAGGGGATAGAGGTCCTCAAGGAGTGGGCATCCCAGGTCCAGAGGGATCA
CCCGGGATGACTGGTCCCATGGGTCCCGCTGGGATCGAAGGAAGAACTGGACCTCGGGGT
GATCCGGGCCCGTCAGGTCCTGTAGGCCCACGGGGAGTTCCAGGTCCAAGAGGAAGCTGC
GACTGTTCATCATCAGCGTATTACGCGTACGCGCCCATTTTAGGGAACAACAAAGGACCC
TAG
Protein sequence:
MDVFWVIFLLLGALFKHGSNGDAETVTASPLNACQSLRPGDIDFQSVDLIAVYRLDGADT
TGVTLVQGSQDLQRAYRVGDGANLTLPLREALPAGLPSTFTITSTFRTNNRRPWSLIRVR
STSLLFSITLLPNVKKMAVFVQGSRVVFSTPTLFKPFWHKVHIAIDNDTVHAAIDCNELE
PESIGGWDFDNATSISIVSNDDGTPAPVDLQWLSLSCNRYNITEDSCEEIEIPESLIATV
TPPIVTPGANDFPLVCNQTCPPGPVGPPGPPGEIGPLGYTGLPGKRGVDGPPGPLGPTGP
KGEKGDIGPPGSASNVSVIGPPGVPGRKGSKGDKGDSGEKGDRGDVGLVGLAGVPGVDGK
DGPPGPVGPPGAPGEPGPVGPPGPASKGFLPLVQGSKGEQGIPGEPGRDGYPGVRGLPGL
DGTPGSPGIQGMQGLPGLPGERGLIGLPGTPGEMGPEGPAGPQGPPGLPGPAGPPGVSTS
TAGVTVPGPPGPPGLMGLKGEQGFPGLPGRDGLDGIPGLPGQRGPPGPPGSLSLVQEQRP
SLSENDVRNICEDIIKVRLADFSSGLVMPTAKPGRRGPPGPPGAPGSPGSVGETGPMGPR
GYPGETGEPGRPGYPGPSGDKGDKGDRGPQGVGIPGPEGSPGMTGPMGPAGIEGRTGPRG
DPGPSGPVGPRGVPGPRGSCDCSSSAYYAYAPILGNNKGP