| New model in OGS2.0 | DPOGS210113 |
|---|---|
| Genomic Position | scaffold1699:- 15041-16153 |
| See gene structure | |
| CDS Length | 1113 |
| Paired RNAseq reads | 147 |
| Single RNAseq reads | 500 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000221 (2e-141) |
| Best Drosophila hit | (6-4)-photolyase, isoform B (3e-124) |
| Best Human hit | cryptochrome-1 (5e-108) |
| Best NR hit (blastp) | (6-4) photolyase [Danaus plexippus] (0.0) |
| Best NR hit (blastx) | (6-4) photolyase [Danaus plexippus] (0.0) |
| GeneOntology terms | GO:0006281 DNA repair GO:0003914 DNA (6-4) photolyase activity |
| InterPro families | IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal IPR002081 Cryptochrome/DNA photolyase, class 1 |
| Orthology group | MCL10635 |
Nucleotide sequence:
ATGCAACATACTGTATACGATTTTAATAGTGTGGTAAAGAAAAACAATGGCAGCATTCCA
CTCACATATCAAAAGTTTCTTTCGTTAGTCTCTGATGTGCAAGTTAAAGACATCATACAA
ATATCCAAGGGTGTGTCTGATGAGTGCAAAGCAAGTGATTATGATTCCCAAGGATATGAC
ATTCCTTCTTTAGAAGAATTTGGAGTAAATGAATCTGAGCTTTCAGAATGTAAATATCCT
GGTGGAGAATCTGAGGGTTTAAAAAGATTAGATGTGTACATGGCAAAAAAACAGTGGGTC
TGTAATTTTGAGAAACCTAAATCCTCACCAAATAGTATTGAACCAAGTACTACAGTATTG
AGCCCATATATTAGCCATGGCTGCTTGTCAGCTAAGTTGTTTTATCATAAGCTAAAGCAA
GTTGAGAATGGCAGCAAACACACTTTGCCACCTGTTTCACTGATGGGACAGCTCATGTGG
AGAGAATTTTATTACACAGCTGGTTCAGGTACTGAAAATTTTGATAAAATGGTAGGAAAC
TCCGTCTGTACACAAATACCTTGGAAGAAAAACGATGCTCACTTAAAAGCATGGGCAGAA
GGTAAAACTGGCTACCCCTTTGTAGATGCAATCATGCGCCAGTTAAAACAAGAGGGTTGG
ATTCATCATTTGGCGAGACATATGGTTGCCTGCTTCTTGACCAGAGGTGACTTATGGATT
TCTTGGGAAGAAGGAGCAAAAGTGTTTGAAGATTTCCTTCTGGACTATGATTGGTCTTTG
AATGCTGGAAACTGGATGTGGCTATCTGCATCTGCTTTTTTCTACAAATACTACAGAGTA
TATAGCCCAGTAGCTTTTGGTAAAAAAACAGATAAAGATGGGCTCTATATAAGAAAATAT
GTTCCCGAGTTGAAAAAATATCCTAGTGAGTTTATCTATGAACCATGGAAGGCTCCAAAG
GGTGTTCAGAAAACGGCTGGTTGTGTAATTGGTGAGGGATATCCCAATAGAATTGTTGAT
CATGATAAGGTCCATAAAGATAATATTCAGAAAATGAATTCTGCTTATAAAGTAAATAAA
GAGAAAAAGGCAATGAAGAGACCGAGACAGTAA
Protein sequence:
MQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKGVSDECKASDYDSQGYD
IPSLEEFGVNESELSECKYPGGESEGLKRLDVYMAKKQWVCNFEKPKSSPNSIEPSTTVL
SPYISHGCLSAKLFYHKLKQVENGSKHTLPPVSLMGQLMWREFYYTAGSGTENFDKMVGN
SVCTQIPWKKNDAHLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWI
SWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFYKYYRVYSPVAFGKKTDKDGLYIRKY
VPELKKYPSEFIYEPWKAPKGVQKTAGCVIGEGYPNRIVDHDKVHKDNIQKMNSAYKVNK
EKKAMKRPRQ