| New model in OGS2.0 | DPOGS202373 |
|---|---|
| Genomic Position | scaffold1550:- 28608-31989 |
| See gene structure | |
| CDS Length | 756 |
| Paired RNAseq reads | 149 |
| Single RNAseq reads | 474 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013896 (5e-109) |
| Best Drosophila hit | Ski6 (9e-82) |
| Best Human hit | exosome complex exonuclease RRP41 (2e-75) |
| Best NR hit (blastp) | exosome complex exonuclease RRP41, putative [Aedes aegypti] (5e-94) |
| Best NR hit (blastx) | exosome complex exonuclease RRP41, putative [Aedes aegypti] (3e-90) |
| GeneOntology terms | GO:0000177 cytoplasmic exosome (RNase complex) GO:0000176 nuclear exosome (RNase complex) GO:0000175 3'-5'-exoribonuclease activity GO:0005700 polytene chromosome GO:0003723 RNA binding GO:0006396 RNA processing GO:0005737 cytoplasm GO:0005652 nuclear lamina |
| InterPro families | IPR001247 Exoribonuclease, phosphorolytic domain 1 IPR020568 Ribosomal protein S5 domain 2-type fold IPR015847 Exoribonuclease, phosphorolytic domain 2 |
| Orthology group | MCL13044 |
Nucleotide sequence:
ATGCCGGGACCCGATTTATTATCAAGCCAAGGGCTTCGGCTGGATGGTAGAAGACCTAAC
GAGCTTCGTCGGATCAGGTGTAAATTGGGAGTATTCACTCAACCAGACGGAAGCGCTTAT
TTGGAACAAGGAAATACGAAAGTTTTAGCGGCTGTATATGGCCCCCATCAGGTCCGCAGG
TTCAGGAAGAGCTCAGCGGAAGGTGTAGTTGTGAATTGTCAGTATAGTATGGCTACATTT
TCGACTGGTGAGAGGAAAAATCGACCGCGGGGTGATCGTAAATCCCAAGAGATGTCAATG
CATCTTAGACAGGCCCTCACGGCTGCTATTAAGACGGAAATGTACCCACGCTCACAGATT
GACATCTATGTTGAAGTGTTACAGGCAGATGGTGGTGCGTATTGCGCGAGTGTGAACGCC
TCGACGCTGGCGTTGATAGACGCGGGTATACCTCTGAAGGCCTATGTGTGTTCGTGCTCG
GCGTCTATGGCGTGGTTGGACGGGGTGCCGGAGCCCCTACTCGACGTGGGCCACGTTGAG
GAGGCGGCCGGCGGCGTGACCTTGACAGTCGCGAGTCTACCTAGTACTGGTAGTATAGCA
CTATTGGAGCTCTCTCATAGGTTGCACAGTGATTACTTCGACACTGTTCTCAGTAGAGCC
ATGCAGGGATGTAGAGATATTGAAGTTATATTAGACAAGGCTGTGAGAGATCACCTCGCT
GAAGGATGGACCAAACAAGATGTTATCACTATATGA
Protein sequence:
MPGPDLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRR
FRKSSAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQI
DIYVEVLQADGGAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVE
EAAGGVTLTVASLPSTGSIALLELSHRLHSDYFDTVLSRAMQGCRDIEVILDKAVRDHLA
EGWTKQDVITI