| New model in OGS2.0 | DPOGS204008 |
|---|---|
| Genomic Position | scaffold4758:+ 1-1511 |
| See gene structure | |
| CDS Length | 405 |
| Paired RNAseq reads | 670 |
| Single RNAseq reads | 1438 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006476 (4e-08) |
| Best Drosophila hit | tsunagi (3e-37) |
| Best Human hit | RNA-binding protein 8A (1e-36) |
| Best NR hit (blastp) | RNA binding motif protein Y14 [Bombyx mori] (4e-68) |
| Best NR hit (blastx) | RNA binding motif protein Y14 [Bombyx mori] (2e-56) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0007310 oocyte dorsal/ventral axis specification GO:0007314 oocyte anterior/posterior axis specification GO:0005737 cytoplasm GO:0000226 microtubule cytoskeleton organization GO:0007312 oocyte nucleus migration involved in oocyte dorsal/ventral axis specification GO:0005634 nucleus GO:0007317 regulation of pole plasm oskar mRNA localization GO:0006406 mRNA export from nucleus GO:0046595 establishment of pole plasm mRNA localization GO:0045451 pole plasm oskar mRNA localization GO:0006396 RNA processing GO:0000166 nucleotide binding GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR008111 RNA-binding motif protein 8 IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL12338 |
Nucleotide sequence:
AAACGTAAAGGTCGTGGATTTGGGTCGGAGGCAGGCGGTGGCGGCTCCGAAAGAGGCAAT
AGGGGCAGATATGACAGTCTTGCACCAGAAGGTAATGGGAATACTCCCGGGCCACAAAGA
TCGGTTGAAGGATGGATCCTGTTTGTCAGTAATGTGCATGAAGAAGCACAGGAAGAAGAT
ATTCAGAACCAGTTCTCAGAGTTTGGGGAAATAAAGAATATTCATTTAAATCTTGATAGA
CGCACAGGATTCTTGAAAGGCTATGCCCTAGTCGAGTACGAGACGTACAAACAGGCTGCT
AGTGCCAGGGAAGCTCTAGACGGCACAGACATACTCGGTCAGGCAATTTCCGTGGACTGG
TGTTTTGTTAAAGGACCAACCAAGACTCACAAGAAACGGCGATAA
Protein sequence:
KRKGRGFGSEAGGGGSERGNRGRYDSLAPEGNGNTPGPQRSVEGWILFVSNVHEEAQEED
IQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGTDILGQAISVDW
CFVKGPTKTHKKRR