| Genomic Position | scaffold6817:- 726-4233 |
|---|---|
| See gene structure | |
| CDS Length | 3300 |
| Paired RNAseq reads | 632 |
| Single RNAseq reads | 1670 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | polyprotein [Tetraodon nigroviridis] (3e-108) |
| Best NR hit (blastx) | polyprotein [Tetraodon nigroviridis] (5e-103) |
| GeneOntology terms | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
| InterPro families | IPR007087 Zinc finger, C2H2-type IPR000477 Reverse transcriptase |
| Orthology group | MCL10002 |
Nucleotide sequence:
ATGGACCCGGCACCCGCACGGACAGTCCGAGAGGGGGGGCGAAAGATCTGTCCACCGGTC
GATGTAAACGGCGAAAACGGCGCGAATACGGATTTGAAATGCCCTACGTGCGGGAAAAAT
TACAAGAGACGAGCCTGGTACATTAAACATCTAAAAACACATAATGGTGTTGAAGCACGA
CAATCGTCGGTAAGTTCTTCAACTTTCACTGCGGATAGAGTTGACCCTCATGTATCCCAT
GGTGAACCATTAACTGGAAACTACCAGGAGTCCATTGACATCCGGACACGTCTTAGCATT
CCAAACATGAAACAATCGACTTGGAAAGTTCACGACGACAATTTAGCGGACCTGTTAGAG
CATCCGGGCTCGAAGCAGGATTTGAACTCGCGAGTAGAAACTTTCCAAAATACTATTTAC
GACTACTTTAACGAGCAATATCCACCTCGAAATCATTACGCTCGCAAAAATAAAGACAAT
TCTTTCAAGATAAAAATGAGGAGGAAAAAACGGGAATTAATAAAAAATCTACGTATAGCC
AAAGCCCTAGGCGACAATCACCTTAGTCATCAACTAGCTAGGGCGTTAAGATCGATTCTA
AAATTAATTCAAGGAATATCGGCGCAAACCGCAGAAAATCGCGATAATTTTGACCGGGCA
AAACAGGAAGTAGATTTTGATAAAAACCCTTTTGAGTATTCGAAAACCATTTTTAAGAAA
GAACGCGGACAGCTTCTCTTGACCAATGAACAAATTTACGATCATTTTAAGAGCACATAC
GAAGTGCCTAAAAGTGTAAGACTCTATGCGGATCCCAACGAACAAAAACCTGGAATTCCT
CGTTTCGATTTCCACGGCATTCCACCAACGCTAGATGAGATAAGTATTCAGATAAAGAAA
AAATCGTCTAAATCTGCGCCGGGACCCGATGGTATCCCATATATAGTCTTTAAAAAATGT
CCATCGGTTCGTAAACATCTCACATATATATACGATAAAATCTGGTCAAGGAAGCAAATC
CCGGAGTGCTTCGGGAAAGCAATTTTTGTCCTCATTCCCAAAAAAGATCGAGTCACAGAT
CCAAAAGATACTAGACCGATAGCCTTAACAAATACTATATCCAAAATCTTTTTCTCAGTT
CTACAAACGAGAATGACGCGATTCATGCTGAGCAACAGGTATTTTAGGCCAAATCACCAG
AAAGGGTTTTTACCCGGAATTTCTGGATGCCTAGAACACAACACTTTGCTGTCGGAGAGT
TTAAAAGATGCTAGGAAAAGCGAGAGGCAAATTACAGTTTGTTGGATAGACTTAGAGAAT
GCGTTCGGGTCGATACAACACGAATTGATGCTATTCGCGCTGAGATGGTACAACTTTCCG
CCCCTAGTTACCGATATGATCGCGTCGTACTACTCAAAATTAAAGTTTTCTATAACAACT
AAAGAAGGCCATTCAAAAACTTTTAGTTACAATGTAGGACTATTTCAAGGTTGCTGTTTG
TCTCCAATTGTATTTAATATTGTAATTAACATCTTAGTAGATAAATTAACCAGCAACGAG
AAAAAATGGGGGTATCGGTTCAAGTTTAATAATAAATACACGGAATCCATTTTAGCCTTC
GCTGACGATCTCGCAATACTGACACGTAACCCCAAACACTGTCAAGTACTATTAGATGAA
GTGGATAGATTCTGTGAGTGGACCGATGGATTGAGGACAAAACCAAGTAAATGTCACTGT
CTGTGTCTCGGTAGGCGGAGTACAAGATACACCTCATACGATCCGGGATTATCGTTAGGC
GGTCAATGCATTTCTACGGTTACAGAAAATGCACCATTTAAATTTCTCGGTCGGAAGATT
GATAATATAGGTCGTACTCCATCTTTAGAAGGTATAGTAGATAGCTTTTTAAACGATCTC
AACAAGGTAGATAGCCAACAGATCAGTAACGTTAAAAAAGCTTGGATCTACGATAATTAC
CTAACTTCACGTTTAAATTGGCCTTTCCTCGTTTATGATTTTAATAAAACCCTTTTGTCA
AAGTTAGATGCAGGCGTCATAAAGATGTTGAAGTTGTGGCTCGGGCTCGCGCTAACGGCT
GATTCATCGGCTTTATTTAGGGATCGCAATAGTTTTGGGATGAGTCTAAAAAGGCCATCG
GAGCTCTACAAACACCTGAGAGTTTCCAAGAGATACATCCTGGGGAAATCCCAGGATGAC
GTCGTTACATCGCTCCCAAAAGACAAAGATGCCCCAGAGCTAGAGTCAAGGCTTCAATTC
CACAAGCAGTTTATGATAGGAGCGCAAAGTAACAGAGTAGGGTTAGGATCAAGTAGGAAG
GTCCAAGATACGGATATATTGAAGTCTTTTATTCGACAAGACGAGAATGATAAATATAAG
ATCCATGCAATAAGTTTAGAAATGCAGAACGAGTGGTTAGACATAGGAGATTTTTGCATC
CCATTAGCACTAAAATGGCGCACCTTAATCCATGATTGGTCGCCAGCATTGCTAAAATTC
TATCTCAATGCATTCCAGATGACTCTCCCAGATCAGAGTAATTTAGTAAGATGGGGTAAA
GGTACCGAAAAGACTTGCTATATCTGTGGGAAGGCAGTTGGAACTGCTAGGCACTTGTTA
GTGGGATGTAAGGTACTCCTCGATAGCGGTCAATACTCGCGTCGTCACGATAGGGTTCTA
GAAATCATACGTGAAGCGGTTAGTCTTTCGGTAGCCAGAGCGCAAAAAGGAATAACCACA
AACGAGCGATCAGTAGGTTTTGTGAGAGAGGGCACTAGGGCTATAAAAACAAATGTTAAG
CCTTACTCCATCCTTAAAGCGGCTACGGATTGGACTATAATGATGGATACGTGTGAAAAA
CAATACAAAATCCCCGAGGATATTTGTGCGTCGGCCTCCAGACCGGACATATTCATGTAT
TCGCGAATCTTAAAGCGCGTTGTGATGATAGAGCTTACGGTTCCTTGGGAAACCAACATC
CCCAAAGACCATACCATCAAGGTCAACAAATATTACGAGCTCACAAACGAACTCACTCGA
AATAGGTTCGTCGTGGATTTATACGCGGTAGAAGTGGGAGCGAGAGGTATAACGGCTAAA
TCTCTCTACAACCTACTAAAAGACTTAGGCCTGTCCAGAACTCACATCAATTCGTTCTTG
GAACGTACTTCGAAGGCAGCCCTAGTAGGTTCTTTTCAAATATGGTTAGGTAGGGAGAGG
AGCTTGGACAGTGGAGGTTCCACTCCCTGCAACGCAATGGACCCGGCACCCGCACGGTGA
Protein sequence:
MDPAPARTVREGGRKICPPVDVNGENGANTDLKCPTCGKNYKRRAWYIKHLKTHNGVEAR
QSSVSSSTFTADRVDPHVSHGEPLTGNYQESIDIRTRLSIPNMKQSTWKVHDDNLADLLE
HPGSKQDLNSRVETFQNTIYDYFNEQYPPRNHYARKNKDNSFKIKMRRKKRELIKNLRIA
KALGDNHLSHQLARALRSILKLIQGISAQTAENRDNFDRAKQEVDFDKNPFEYSKTIFKK
ERGQLLLTNEQIYDHFKSTYEVPKSVRLYADPNEQKPGIPRFDFHGIPPTLDEISIQIKK
KSSKSAPGPDGIPYIVFKKCPSVRKHLTYIYDKIWSRKQIPECFGKAIFVLIPKKDRVTD
PKDTRPIALTNTISKIFFSVLQTRMTRFMLSNRYFRPNHQKGFLPGISGCLEHNTLLSES
LKDARKSERQITVCWIDLENAFGSIQHELMLFALRWYNFPPLVTDMIASYYSKLKFSITT
KEGHSKTFSYNVGLFQGCCLSPIVFNIVINILVDKLTSNEKKWGYRFKFNNKYTESILAF
ADDLAILTRNPKHCQVLLDEVDRFCEWTDGLRTKPSKCHCLCLGRRSTRYTSYDPGLSLG
GQCISTVTENAPFKFLGRKIDNIGRTPSLEGIVDSFLNDLNKVDSQQISNVKKAWIYDNY
LTSRLNWPFLVYDFNKTLLSKLDAGVIKMLKLWLGLALTADSSALFRDRNSFGMSLKRPS
ELYKHLRVSKRYILGKSQDDVVTSLPKDKDAPELESRLQFHKQFMIGAQSNRVGLGSSRK
VQDTDILKSFIRQDENDKYKIHAISLEMQNEWLDIGDFCIPLALKWRTLIHDWSPALLKF
YLNAFQMTLPDQSNLVRWGKGTEKTCYICGKAVGTARHLLVGCKVLLDSGQYSRRHDRVL
EIIREAVSLSVARAQKGITTNERSVGFVREGTRAIKTNVKPYSILKAATDWTIMMDTCEK
QYKIPEDICASASRPDIFMYSRILKRVVMIELTVPWETNIPKDHTIKVNKYYELTNELTR
NRFVVDLYAVEVGARGITAKSLYNLLKDLGLSRTHINSFLERTSKAALVGSFQIWLGRER
SLDSGGSTPCNAMDPAPAR