| New model in OGS2.0 | DPOGS204481 |
|---|---|
| Genomic Position | scaffold272:- 17-948 |
| See gene structure | |
| CDS Length | 852 |
| Paired RNAseq reads | 650 |
| Single RNAseq reads | 1525 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007824 (1e-103) |
| Best Drosophila hit | sucb, isoform A (5e-72) |
| Best Human hit | succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform 2 precursor (4e-64) |
| Best NR hit (blastp) | AGAP004352-PA [Anopheles gambiae str. PEST] (1e-98) |
| Best NR hit (blastx) | AGAP004352-PA [Anopheles gambiae str. PEST] (3e-79) |
| GeneOntology terms | GO:0045244 succinate-CoA ligase complex (GDP-forming) GO:0004776 succinate-CoA ligase (GDP-forming) activity GO:0006099 tricarboxylic acid cycle GO:0005524 ATP binding GO:0005811 lipid particle |
| InterPro families | IPR005809 Succinyl-CoA synthetase, beta subunit IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type IPR013815 ATP-grasp fold, subdomain 1 IPR013816 ATP-grasp fold, subdomain 2 |
| Orthology group | ND |
Nucleotide sequence:
ATGTCTGCGATAACCAAAACTAGTAAGATATTTCGTGTACTTATGCATCAATATTCACCA
CGTGTTACATGTAAAAGAAATTTAAATCTTCAAGAATATCATAGCAAAGACCTGTTAAAA
AAGCACCAAGTTTCTATACAAAATTTTCGACTTTTGGATTCATCTTTGGACTCTAAGGTG
CTCTCCGACTTTAAGGCTAATGAATATGTAGTTAAGGCTCAAATATTGGCTGGTGGAAGA
GGAAAAGGCCATTTTAATAATGGATTTAAAGGTGGTGTCCATTTAACAAAGAATCCTAAT
GAAATTGTAAACTTAGCAAGAAATATGATTGGACATAAACTCATCACAAAACAAACGCCT
AAAGACGGCATATTGGTGGATAAAGTAATGATAGCAGAAAGTGTTAACATAAAGAGGGAA
ACATACTTGAGTATAGTGTTAGAAAGAGCATATAATGGTGCAGCTTTAGTAGCATCTCCA
GCGGGAGGAATGGATATTGAAGCGGTGGCTGAAAAAACTCCTCATTTAATAAAAACTGTT
CCTATTGACATATATGAGGGCATAACAGATAAAACTGCTAGAGAAGTTGCCGAGTTTCTA
GAATTTAAAGGGCCTCTACTTAATAAATGTGCTGATGAAATTAAAAAGTTATGGCAGCTA
TTTTTAAAGGTAGATGCTACACAACTAGAAATTAATCCTCTAGTTGAAACTGATGATGGT
AAAGTTGTAGCTGTTGATGCAAAGATCAATTTTGATGGCAATGCTGAGTTTAGGCAGAAG
GAAATCTTTGCACTTGATGACAAGTCTGAGACAGATCCTAGAGAGGTAGTGTCTTTAGTA
AATTTTTTTTAA
Protein sequence:
MSAITKTSKIFRVLMHQYSPRVTCKRNLNLQEYHSKDLLKKHQVSIQNFRLLDSSLDSKV
LSDFKANEYVVKAQILAGGRGKGHFNNGFKGGVHLTKNPNEIVNLARNMIGHKLITKQTP
KDGILVDKVMIAESVNIKRETYLSIVLERAYNGAALVASPAGGMDIEAVAEKTPHLIKTV
PIDIYEGITDKTAREVAEFLEFKGPLLNKCADEIKKLWQLFLKVDATQLEINPLVETDDG
KVVAVDAKINFDGNAEFRQKEIFALDDKSETDPREVVSLVNFF