| New model in OGS2.0 | DPOGS211451 |
|---|---|
| Genomic Position | scaffold608:+ 57204-60684 |
| See gene structure | |
| CDS Length | 1902 |
| Paired RNAseq reads | 502 |
| Single RNAseq reads | 1336 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002157 (0.0) |
| Best Drosophila hit | pannier, isoform A (3e-41) |
| Best Human hit | trans-acting T-cell-specific transcription factor GATA-3 isoform 1 (4e-40) |
| Best NR hit (blastp) | GATA transcription factor GATAc [Culex quinquefasciatus] (6e-52) |
| Best NR hit (blastx) | GATA transcription factor GATAc [Culex quinquefasciatus] (4e-50) |
| GeneOntology terms | GO:0007391 dorsal closure GO:0003700 sequence-specific DNA binding transcription factor activity GO:0007350 blastoderm segmentation GO:0007507 heart development GO:0045449 regulation of transcription GO:0005634 nucleus GO:0030154 cell differentiation GO:0007179 transforming growth factor beta receptor signaling pathway GO:0007389 pattern specification process GO:0045893 positive regulation of transcription, DNA-dependent GO:0042440 pigment metabolic process GO:0045892 negative regulation of transcription, DNA-dependent GO:0008407 bristle morphogenesis GO:0007498 mesoderm development GO:0007513 pericardial cell differentiation GO:0010002 cardioblast differentiation GO:0007510 cardioblast cell fate determination GO:0007398 ectoderm development GO:0006355 regulation of transcription, DNA-dependent GO:0043565 sequence-specific DNA binding GO:0008270 zinc ion binding GO:0048542 lymph gland development GO:0035050 embryonic heart tube development GO:0035051 cardiac cell differentiation GO:0060047 heart contraction |
| InterPro families | IPR000679 Zinc finger, GATA-type IPR013088 Zinc finger, NHR/GATA-type |
| Orthology group | MCL18008 |
Nucleotide sequence:
ATGATTCAAAGAAACGAAGAACAAAGAGGAGAGAACGCAGAGGCCCTACAACTTGTTAAA
AATGAGGAACGTTCGGATATGAGCATCAACGACTCAAATACAAATGGCGAAGGATTGTCA
ACAGTCGTATCAGCGTCAGGAGCGGAAACGGGGGCCGAGCCACACTCAGTGATCACATCG
AGGCGTGCACAAAGAACGATAACTACTGCGGGCCATATAACAGATTCAACGGATATAAGC
GACGACGGAGTCAAAGACGAACCTCCAGAACAAACGCCGCTGGATCATGACCAGATGCAG
TACCCGTCCAAGATGGAGGAAGTCGATCAACGCTCGAGCGCCACACATTACGACGAAGAA
AGGTTAAGACTGGCTGAGGCAGAAACGGCACGATATCTCGCTTTTAAACAGGAGCCCTAC
AGAGGTTTACAGTCTCCATCTCCCGCCCCACAAGATAAACGACCCCCGCAGTACTCACGA
CTACCTCCTCCGCGGCCTGCTTATGGCCGAGGGCTGTCCCTGCGGTATGGACCTCCTCAC
CATGTGATAGTATCACAGGACGGAGAGCCCGAGGAACATCCGCATGAAGTTTATCTGCAA
AAAGAAAAAGAACAATTACAGCAAGCATACGTATCAAACGAAGCGAACGCGCAGGAAAAT
AGACAATATGCCGCCGTGCTCGGAGATCAGGTAGCCGTCTCGTCAGCGCTGGAAATGATT
CAAACGACATCTTTGAGTAATCAACAGTCGATCGGAGTGGCATATCAACAGGTAAAGTAT
GAATCGAGAGGTGAAGCCGAGCCCCGGCCGACGACGTACGCCAGCCTACAACCGGTGACG
TCGGTACATAGCTCGAGCGGGTACACGTACGCGGGACAGAGTCCTCAGTACGCGGCGGCC
GGGTATGGTGCTTACGGTGGCAGCAAAGAGCTGCTGACTCTGTACGGCGCGGGTGGTAGT
GCGGGCGGGGCGCCACGGGGGGACGACTCGCCCCCGGGACAGCTGCTCTACCGCAGCGAC
CCCACGCTCTCCTCCTCGTCTCTGAACACGAGGGCGCACGTCGTCTACGGGTCCGTGGTT
CCTCAGTCACAGACGGTCTACGAGACACCGCCCAGTCCAAACTCACAGCAGGTGACACTA
TACACTCACGGGAATACCGTCCAGTATAAAGTGGGCGGCGAGCACTATCTAGGACAGGGC
AGCGGAGTGGAATACGTCCCGGTGTCGGGTTACGAGGGAGGTCTGCTGGTGGAGAGCTAC
CCTGCCGCGCCTCAACCCTGGCCAGCACACAACATACTTAATATAGATGATGGATTCGAT
CCCAGCATGGCTGGTATGGGGGAGGTGAAGGAGTGCGTGAACTGTGCGGCGGCCACGACT
CCTCTCTGGAGAAGAGACGGCACCGGTCATTACTTGTGCAACGCCTGCGGGCTATACACC
AGAATAAATGGCGTCAACCGACCACCACTGAAAGGACAAAAGACGAAGCCACAACAGGCT
CTCCCTACTAACGGCAACCGTCGTGTCGGAGTGACCTGCGCCAACTGCCGCACCTCCAAC
ACGACTCTCTGGAGGAGAAACAACAACGGCGAACCCGTCTGTAACGCGTGTGGCCTCTAC
TACAAGCTGCATAATATAGTTGATATCAATACAACACGCGGTCGAGCATCGATTACAGTA
GTAGTAGTGGAGTCATTAGTAGACGACGCGGAGGAAGCCAGGTATCTAATCGGAGCCGTG
CAGCAGTTATCAGGGGACTCCTCGGCAAATATTGGGCCTGTCAACCGTCCGCTAAGCATG
AAGAAGGACGGCATCCAGACGAGGAAGCGCAAGCCGAAGAGCATGGGCAGCGGCGGGGCC
TCGGGCGTAGCGCGCGGTGCTCTGACCGGCTATCAACGCTAG
Protein sequence:
MIQRNEEQRGENAEALQLVKNEERSDMSINDSNTNGEGLSTVVSASGAETGAEPHSVITS
RRAQRTITTAGHITDSTDISDDGVKDEPPEQTPLDHDQMQYPSKMEEVDQRSSATHYDEE
RLRLAEAETARYLAFKQEPYRGLQSPSPAPQDKRPPQYSRLPPPRPAYGRGLSLRYGPPH
HVIVSQDGEPEEHPHEVYLQKEKEQLQQAYVSNEANAQENRQYAAVLGDQVAVSSALEMI
QTTSLSNQQSIGVAYQQVKYESRGEAEPRPTTYASLQPVTSVHSSSGYTYAGQSPQYAAA
GYGAYGGSKELLTLYGAGGSAGGAPRGDDSPPGQLLYRSDPTLSSSSLNTRAHVVYGSVV
PQSQTVYETPPSPNSQQVTLYTHGNTVQYKVGGEHYLGQGSGVEYVPVSGYEGGLLVESY
PAAPQPWPAHNILNIDDGFDPSMAGMGEVKECVNCAAATTPLWRRDGTGHYLCNACGLYT
RINGVNRPPLKGQKTKPQQALPTNGNRRVGVTCANCRTSNTTLWRRNNNGEPVCNACGLY
YKLHNIVDINTTRGRASITVVVVESLVDDAEEARYLIGAVQQLSGDSSANIGPVNRPLSM
KKDGIQTRKRKPKSMGSGGASGVARGALTGYQR