| New model in OGS2.0 | DPOGS210163 |
|---|---|
| Genomic Position | scaffold702:+ 45024-51412 |
| See gene structure | |
| CDS Length | 1821 |
| Paired RNAseq reads | 6277 |
| Single RNAseq reads | 14340 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004036 (3e-09) |
| Best Drosophila hit | vasa (1e-135) |
| Best Human hit | probable ATP-dependent RNA helicase DDX4 isoform 2 (4e-117) |
| Best NR hit (blastp) | vasa-like [Bombyx mori] (0.0) |
| Best NR hit (blastx) | vasa-like [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0007316 pole plasm RNA localization GO:0007315 pole plasm assembly GO:0043186 P granule GO:0045495 pole plasm GO:0048477 oogenesis GO:0046843 dorsal appendage formation GO:0008298 intracellular mRNA localization GO:0006417 regulation of translation GO:0003724 RNA helicase activity GO:0007278 pole cell fate determination GO:0046011 regulation of oskar mRNA translation GO:0008026 ATP-dependent helicase activity GO:0007314 oocyte anterior/posterior axis specification GO:0046012 positive regulation of oskar mRNA translation GO:0045727 positive regulation of translation GO:0006378 mRNA polyadenylation GO:0007294 germarium-derived oocyte fate determination GO:0048134 germ-line cyst formation GO:0030717 karyosome formation GO:0005524 ATP binding GO:0007293 germarium-derived egg chamber formation GO:0003723 RNA binding GO:0005515 protein binding GO:0003730 mRNA 3'-UTR binding |
| InterPro families | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
| Orthology group | MCL13203 |
Nucleotide sequence:
ATGGATGACGATTGGGATGAAAACTGTGATGTTGTTCAGCCACAACATCAGCCAACAATA
CAGAACAACTTTAGCAATTATGATGTAGATGAAGGTCACAGTTTGTCCAGAGGAAGGGGA
TTCCCCACATTTATAGAAGAAAATGATTTCAATAAGGGCAGCAATAGTTTTGAAGAACGA
AGAGGCAGGGGAGGTTATGGTTACGATCGGGGTGGACGTGGCCGAGGTGGTCGAGGTACA
CGTGGAGGTGGAAGAGATAGAGGCTATGAAAATGGAGGTGATAACTTTGATGATGGCGAA
AGGGGTGAGAGACACGAGAGGGGTGAGCGTGGGCGTGGTAGGGGAAGAGGGCGCGGGGGG
AGGGGCTTCAGACCAACCGGAGATGGCGGGGGAGAAACAAACGAAGAGGCTGGAGATGAT
AAGAAAACCCCTGTAACATATGTGCCACCAGAGCCAACTGAAAACGAAGACGAGATATTT
AGCAGCACAATAAGTTCCGGCATCAATTTTGATAAGTTCGATTGTATTGCGGTTAAAGTA
ACTGGAGAGAATCCGCCACGAGCGATCGAGAGCTTTGAAACTGCTAATCTGCGGAATTAT
GTATTAAACAACATTCTAAAGTCGGGATATAAAAAACCTACGCCAATACAGAAACATGCT
ATACCGATCATCATGAATGGAAGAGATTTGATGGGCTGCGCTCAAACTGGTTCTGGGAAG
ACTGCGGCGTTTCTTCTTCCTATTATAAATACTCTCTTACAAGATCTTCGTGAACTGGTG
GTCGGTCCAAACGGATGTGCGCAGCCTCAGGTTGTAATAGTAGCCCCTACCCGTGAATTG
ACAATACAAATATTCAACGAGGCCAGGAAATTCTCTTACGGATCCATTTTAAAGATCGCC
GTGGCATATGGCGGTACGGCTGTAAGACATCAAGGGGATAATATATCTCGTGGATGCCAC
ATCCTGGTAGCTACACCTGGTAGACTTCACGATTTTGTTGATCGTAACCGTGTGTCGTTC
GACAGCGTGCGATTTGTAGTACTGGACGAGGCTGATCGTATGTTGGATATGGGATTTATG
CCCAGTGTTGAGAAGATGATGGACCATCCCACCATGGTTAACATTACAGAACGTCAAACC
CTTATGTTTTCGGCAACATTTCCTGAAGATATCCAACATTTGGCCGGACGTTTCCTTAAT
AACTATCTTTTTGTGGCTGTGGGAGTTGTCGGCGGCGCTAGTACGGATGTTGAACAAATA
TTCCATCAAGTTATTAAGTACGAAAAGCAAAATACTCTAAAGAAACTCATTGAAGAAAAT
GATGGCAAACGCATCCTTGTATTTGTCGAAACGAAGCGGAATGCGGATTTCATAGCAGCT
ATGTTGTCTGAACAACAGATGCTCACATCTTCCATACATGGTGACAGAATGCAGAGGGAG
AGAGAGGAAGCCTTGCATAATTTCAAAAGTGGCAGGCATTTTATACTAGTAGCTACTGCG
GTTGCTGCAAGAGGATTAGATATAAAAAATGTGGATATAGTCGTGAATTACGACCTCCCT
AAAAGTATAGACGAGTATGTACACAGAATCGGCAGGACCGGTCGTGTTGGCAACAGAGGC
AAGGCTGTGTCGTTCTTTGATTCCGATCAAGATATTTCATTAGCAGCCGATCTGGCAAAG
ATCCTCCGACAAGCAGAACAGCCAGTACCTGACTTCTTACAGCGTGGTGTTTATTATAAA
ATATTAATCTTATTATTTCAGAACTTTAACAATGCAAGCACAACTGTTGATCAAGGTCAA
GAGCCTGATGAGGAGTGGTAA
Protein sequence:
MDDDWDENCDVVQPQHQPTIQNNFSNYDVDEGHSLSRGRGFPTFIEENDFNKGSNSFEER
RGRGGYGYDRGGRGRGGRGTRGGGRDRGYENGGDNFDDGERGERHERGERGRGRGRGRGG
RGFRPTGDGGGETNEEAGDDKKTPVTYVPPEPTENEDEIFSSTISSGINFDKFDCIAVKV
TGENPPRAIESFETANLRNYVLNNILKSGYKKPTPIQKHAIPIIMNGRDLMGCAQTGSGK
TAAFLLPIINTLLQDLRELVVGPNGCAQPQVVIVAPTRELTIQIFNEARKFSYGSILKIA
VAYGGTAVRHQGDNISRGCHILVATPGRLHDFVDRNRVSFDSVRFVVLDEADRMLDMGFM
PSVEKMMDHPTMVNITERQTLMFSATFPEDIQHLAGRFLNNYLFVAVGVVGGASTDVEQI
FHQVIKYEKQNTLKKLIEENDGKRILVFVETKRNADFIAAMLSEQQMLTSSIHGDRMQRE
REEALHNFKSGRHFILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRG
KAVSFFDSDQDISLAADLAKILRQAEQPVPDFLQRGVYYKILILLFQNFNNASTTVDQGQ
EPDEEW