New model in OGS2.0 | DPOGS207793  |
---|---|
Genomic Position | scaffold2726:+ 13076-15016 |
See gene structure | |
CDS Length | 762 |
Paired RNAseq reads   | 3650 |
Single RNAseq reads   | 11205 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA005323 (8e-64) |
Best Drosophila hit   | Aly (2e-41) |
Best Human hit | THO complex subunit 4 (8e-35) |
Best NR hit (blastp)   | ALY [Bombyx mori] (2e-91) |
Best NR hit (blastx)   | ALY [Bombyx mori] (2e-62) |
GeneOntology terms    | GO:0003713 transcription coactivator activity GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003676 nucleic acid binding GO:0005654 nucleoplasm GO:0031965 nuclear membrane GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
InterPro families    | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
Orthology group | MCL12088 |
Nucleotide sequence:
ATGGTTGATAAAATTGATATGGCTTTGGACGACATAATAAAAGCGGGCAAAAAGGGAAGA
CCGGGAGGCGGTGGAGCTGGAAGAAAATTCGATGTTAAACGCCCAGGAAGAGGAGGTGGA
TTCCGTAACGGACGTACAGGTGGAGTGTTACGTGGTCGAAATCGTGGAGGAGTATCTAAG
CCAACAAATTATACAAGGGGAGATGTAAACAGCACTTGGAAACATGACATGTACAATGAC
TTCAATGATAGAAAAATCCAGAGGAGTGTGCCTCTAACCACAGGGCCCACAAAACTCCTT
GTGTCCAATCTGGACTTTGGAGTTTCAGATTCTGACATACAAGAGCTTTTCTCGGAGTTT
GGCATTCTTAAGAGTGCAGCAGTACATTATGATAGATCAGGAAGATCATTAGGCACAGCT
GATGTTCTGTTTGAAAGAAGAGCAGATGCATTAAAGGCTATGAAGCAATACAATGGAGTA
CCATTAGATGGGCGTGCAATGAATATACAACTAGCAACCTCAGAAATATCAACCTTTAGG
AATGAAGAAAGAAGTAGACCAGCTGGTGGCGGCAGTGTTGGTCCTGTAAGAAGAAATTCT
AACAGAGGAGGCGGTGGTAATCGTCCTCAAGTTGGTGGCAGGGGCAGAGGTGCACGACGT
GGAGGTCGTGGTGGAACAGGCGGACCTCGTGGCAAGAAAGCCGTACCAACAGCAGAACAA
TTAGATGCTGAACTAGATGCTTATGTTAAAGAAATTAAGTGA
Protein sequence:
MVDKIDMALDDIIKAGKKGRPGGGGAGRKFDVKRPGRGGGFRNGRTGGVLRGRNRGGVSK
PTNYTRGDVNSTWKHDMYNDFNDRKIQRSVPLTTGPTKLLVSNLDFGVSDSDIQELFSEF
GILKSAAVHYDRSGRSLGTADVLFERRADALKAMKQYNGVPLDGRAMNIQLATSEISTFR
NEERSRPAGGGSVGPVRRNSNRGGGGNRPQVGGRGRGARRGGRGGTGGPRGKKAVPTAEQ
LDAELDAYVKEIK