| New model in OGS2.0 | DPOGS201083 |
|---|---|
| Genomic Position | scaffold358:+ 40957-58692 |
| See gene structure | |
| CDS Length | 1194 |
| Paired RNAseq reads | 725 |
| Single RNAseq reads | 2087 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001391 (4e-116) |
| Best Drosophila hit | seven up, isoform A (3e-143) |
| Best Human hit | COUP transcription factor 1 (3e-125) |
| Best NR hit (blastp) | seven-up alpha [Bombyx mori] (1e-152) |
| Best NR hit (blastx) | seven-up alpha [Bombyx mori] (3e-141) |
| GeneOntology terms | GO:0007503 fat body development GO:0004879 ligand-dependent nuclear receptor activity GO:0005634 nucleus GO:0003700 sequence-specific DNA binding transcription factor activity GO:0045449 regulation of transcription GO:0004872 receptor activity GO:0048749 compound eye development GO:0001752 compound eye photoreceptor fate commitment GO:0007465 R7 cell fate commitment GO:0007464 R3/R4 cell fate commitment GO:0007462 R1/R6 cell fate commitment GO:0007510 cardioblast cell fate determination GO:0005737 cytoplasm GO:0007507 heart development GO:0001700 embryonic development via the syncytial blastoderm GO:0007417 central nervous system development GO:0007419 ventral cord development GO:0042331 phototaxis GO:0007270 nerve-nerve synaptic transmission GO:0005515 protein binding GO:0003707 steroid hormone receptor activity GO:0008270 zinc ion binding GO:0043565 sequence-specific DNA binding GO:0006355 regulation of transcription, DNA-dependent |
| InterPro families | IPR001628 Zinc finger, nuclear hormone receptor-type IPR013629 Zinc finger, C4-type, C-terminal domain IPR000536 Nuclear hormone receptor, ligand-binding, core IPR008946 Nuclear hormone receptor, ligand-binding IPR013088 Zinc finger, NHR/GATA-type IPR003068 Transcription factor COUP IPR001723 Steroid hormone receptor |
| Orthology group | MCL12432 |
Nucleotide sequence:
ACGCCCGCCAGCCAGGCCGCCTCCACGCAGAGCGGCTCCTCCGCCAACGACAAGGGACAG
AACGTGGAGTGCGTGGTCTGCGGAGACAAGTCCTCGGGGAAACACTACGGCCAGTTCACG
TGCGAGGGATGCAAGTCGTTCTTCAAACGTTCCGTGAGACGGAACTTGACCTACTCCTGC
CGCGGTAACAGGAACTGCCCTATCGACCAGCACCACAGAAACCAGTGCCAGTACTGCCGG
CTAAGGAAATGTCTCAAGATGGGGATGAGGAGAGAAGCTGTTCAGAGAGGTCGAGTGCCT
CCGTCTCAGTCCGCCGGCCTGGCGCTGCCGGGGCAATTCGCCTTGACCAACGGTGATCCC
GCCGCGGGCTTGAACAGTCACCCTTACCTCTCCTCGTACATCTCCCTGCTCCTTCGAGCG
GAGCCCTACCCCACGCAGCCGGCCTCGAGGTACGGCCAATGCGTGCAGCCCACCAACGTC
ATGGGTATAGACAATATATGCGAACTAGCCGCCAGGTTGCTCTTCTCCGCCGTCGAGTGG
GCGAGGAACATCCCCTTCTTCCCCGAACTGCAGGTCACGGACCAGGTCGCGCTCCTGCGA
CTGGTTTGGTCCGAGCTGTTCGTCCTCAACGCCTCCCAATGCTCGATGCCCCTCCACGTG
GCGCCGCTGTTGGCCGCCGCGGGTCTACACGCGTCACCCATGGCCGCCGACCGCGTGGTG
GCCTTCATGGACCACATACGGATCTTCCAGGAGCAGGTGGAGAAGCTGAAAGCGCTCCAC
GTGGACTCCGCGGAGTACTCCTGTCTGAAGGCCATCGTCCTCTTCACGACAGGTAAAATT
TTGGACAGCTTATTCGGGGAGGCGAGGTTGCTGCTGTACAGAGTCGCCGGCGCGTTCGCT
GCTATCACGAACCACGGGGAGCTCCTGGCGCTGGTCCGCACGCACTTGGACGCGTACGCC
GAGGCGACCAGGGCTCCCCAGCCGCCCGCGCCGCCGCCTCCGTCCGCAGCCTCCTCGGGC
TACTACTCCACGATGGAGACATCGCTCGGCGTCAACTCCTCCCTGTCCTACGGCAGCTTC
CTGTCTCCGTCGCGTGTGCCGCCTCAGTATACGAGCAGTCCGCGTTTGGACGCGGGTACG
TCATCGTTTAAGATATACGAGGGCAGCGGGAGCAGGGTTGACGCCAAGCGATGA
Protein sequence:
TPASQAASTQSGSSANDKGQNVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSC
RGNRNCPIDQHHRNQCQYCRLRKCLKMGMRREAVQRGRVPPSQSAGLALPGQFALTNGDP
AAGLNSHPYLSSYISLLLRAEPYPTQPASRYGQCVQPTNVMGIDNICELAARLLFSAVEW
ARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVV
AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKILDSLFGEARLLLYRVAGAFA
AITNHGELLALVRTHLDAYAEATRAPQPPAPPPPSAASSGYYSTMETSLGVNSSLSYGSF
LSPSRVPPQYTSSPRLDAGTSSFKIYEGSGSRVDAKR