| New model in OGS2.0 | DPOGS208882 |
|---|---|
| Genomic Position | scaffold1024:+ 3361-10104 |
| See gene structure | |
| CDS Length | 2121 |
| Paired RNAseq reads | 1396 |
| Single RNAseq reads | 3439 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008085 (3e-65) |
| Best Drosophila hit | CG32344 (1e-136) |
| Best Human hit | ATP-dependent RNA helicase DDX54 isoform 1 (7e-123) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC011242 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC011242 [Tribolium castaneum] (2e-162) |
| GeneOntology terms | GO:0000166 nucleotide binding GO:0003714 transcription corepressor activity GO:0003723 RNA binding GO:0004004 ATP-dependent RNA helicase activity GO:0004386 helicase activity GO:0005102 receptor binding GO:0005524 ATP binding GO:0005634 nucleus GO:0005730 nucleolus GO:0006396 RNA processing GO:0008026 ATP-dependent helicase activity GO:0016070 RNA metabolic process GO:0016787 hydrolase activity GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0030331 estrogen receptor binding |
| InterPro families | IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR012541 DBP10CT IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL13926 |
Nucleotide sequence:
ATGGGATTTAACTTTCCGATTCTCAAAGGAATTACAAAAAGAGGTTATAAACAACCTACA
CCAATTCAGAGAAAAACCATACCTATAGCACTGGACAACAAGGACGTTGTTGCTATGGCC
CGTACAGGATCTGGTAAAACAGCTTGTTTTGTTTTACCTATCTTAGAGAAACTTATGTCA
CCTGGTAACAAACCATTACATGGGAAAAATTTGCGGGCCCTGATATTATCCCCTACAAGA
GAGTTAGCTCTACAGACATTGAGATTCGTCCGTGAGTTAGGAAAGTTTACAGGATTAACT
TCGGCTGCCATTCTTGGTGGAGAATCTATCGAACAACAGTTTGGTGTTATGTCTGGCTCC
TCTCCGGACATTGTAGTGGCAACACCAGGAAGATTCTTACATATATGTATTGAAATGAGT
CTTAAATTAGACAATATAAAGATTGTGGTATTTGATGAAGCTGACAGACTTTTCGAACTT
GGTTTTGGTGAGCAGCTACAAGAAATTGTTGCCCGTTTGCCATCCAGCCGTCAAACATTA
TTATTCTCGGCAACATTGCCTAAAATGTTGGTGGAATTTGCTCGTGCTGGTTTAAGCGAT
CCAGTTTTAATTAGATTGGATGTTGATTGGAAGCTGCCATCTACTCTATGGCTGGGTTGG
ATATATGTGAGATCGGAATTAAAGACTGCAGCATTATTACTATTACTAGATAGAGTTTTG
ACCCCTACTACACCTCAAGCAGTAGTGTTTGCTGCAACTAAACATCATGTGGAATATTTA
CACTTGATCCTCAATAAAGCTGGTATATCATCAACTTACGCTTACTCCGGGCTTGATCCA
TCGGCACGTAAGATAGCCCTTGGGAAGTTTACAAACAAAAAATGTTCAGTGCTTTTAGTT
ACTGATGTGGCCGCCAGAGGTCTCGATCTACCATCATTGGATACTGTCATTAACTACAAC
TTTCCCGCCAAACCAAAACTCTTTGTACATAGAGTTGGTCGCAGTGCTCGAGCCGGTCGT
TCTGGTCGTGCGTTGTCGCTGGTGTGTGCGGAGGACGTCGCTCATTTACTTGATCTTCAT
TTATTCCTCAACGCCACTTTAATAGAACCCTCGCAGGTGAATGAATGCGGCACATCTTGT
CCCAGCGGCGTGTGGGGCGTAGTGCCGCCCGCGGCGCTTGAGATGCGACATCAAGACGTG
CTCGCCTGGGAGAGAAACTACTCAGAGATTGAAGAGGCGAGTCGAATATGCGGCCGCGGT
TGGCAGCAGTACTTAAAGTGGAGGGAGGCTGCCTCGGCTGAAGCCAACAAGAGGTCAAAG
GTCACTCCGCGACCGACTCTACCGCACCCCTTCCTTGTAGATGAAAACGATCAAACAACC
ATAGCCCTCGTCGAGCAAATCAAGAACTACACGCCCAAAGGAACGATACTCGAATTGGCG
GGAAAGAACGACTCACCAATGTACCTCGCTATGAAAGCCAAAAGACGCGTTCACGGCAAA
ATGGTGCAGAAGACGAGGGAAAATAAAAATAATGCTGACGACGGCTTATTACAAGATGTG
ACAAATCAAGAAGCAAAGGACAAAGGAAAGAAAAATAAGAAAGCTGTCCAACGAGATGAG
AATTATATACCTCACTTTGCCAGCGATCAACACACGGAAGCAGGTATGGCGGTTAACTTT
GCCGCTGGCGCGTCGAGCGCGGAACTGGAAATGAGAGGCGACTGTGATGCGACGGTGCGG
CAACATCGCGCGCAGCTGAAGTGGGACAGAAAGAGAAAGAAGATGGTGCACGTCGACCCT
GACGGCGGTCGTAAGATGATTCGTACCGAGAGCGGCGGCCGTGTGCCGGCCTCCTACAAG
AGTGGACGATACGACGCTTGGCGGAAACGGAACGAGCCCGACACGATCGACAACGAACAA
CCGATAACCAATGGGCCTAAACCTGTGTCCGAGTTCCGACCGCGCTGGGTGAAACACAAT
GAGAGAGTGGCGAAGAAAAAGGCAGAGGCGTCGTCTAAAGAGTTCCGTGACAAACAACAG
ATAGTCAAGGAACGGTTAAGAAAAGAAAAAATAAAGCAGAAACTGAAACACAAAATGAAG
ACTAAAAAGAAAAAGAAATAA
Protein sequence:
MGFNFPILKGITKRGYKQPTPIQRKTIPIALDNKDVVAMARTGSGKTACFVLPILEKLMS
PGNKPLHGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFGVMSGS
SPDIVVATPGRFLHICIEMSLKLDNIKIVVFDEADRLFELGFGEQLQEIVARLPSSRQTL
LFSATLPKMLVEFARAGLSDPVLIRLDVDWKLPSTLWLGWIYVRSELKTAALLLLLDRVL
TPTTPQAVVFAATKHHVEYLHLILNKAGISSTYAYSGLDPSARKIALGKFTNKKCSVLLV
TDVAARGLDLPSLDTVINYNFPAKPKLFVHRVGRSARAGRSGRALSLVCAEDVAHLLDLH
LFLNATLIEPSQVNECGTSCPSGVWGVVPPAALEMRHQDVLAWERNYSEIEEASRICGRG
WQQYLKWREAASAEANKRSKVTPRPTLPHPFLVDENDQTTIALVEQIKNYTPKGTILELA
GKNDSPMYLAMKAKRRVHGKMVQKTRENKNNADDGLLQDVTNQEAKDKGKKNKKAVQRDE
NYIPHFASDQHTEAGMAVNFAAGASSAELEMRGDCDATVRQHRAQLKWDRKRKKMVHVDP
DGGRKMIRTESGGRVPASYKSGRYDAWRKRNEPDTIDNEQPITNGPKPVSEFRPRWVKHN
ERVAKKKAEASSKEFRDKQQIVKERLRKEKIKQKLKHKMKTKKKKK