New model in OGS2.0 | DPOGS200620  |
---|---|
Genomic Position | scaffold173:- 89459-95966 |
See gene structure | |
CDS Length | 1224 |
Paired RNAseq reads   | 15 |
Single RNAseq reads   | 50 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008906 (2e-178) |
Best Drosophila hit   | runt (4e-77) |
Best Human hit | runt-related transcription factor 3 isoform 1 (5e-47) |
Best NR hit (blastp)   | runt [Bombyx mori] (0.0) |
Best NR hit (blastx)   | runt [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0007540 sex determination, establishment of X:A ratio GO:0016563 transcription activator activity GO:0043193 positive regulation of gene-specific transcription GO:0003704 specific RNA polymerase II transcription factor activity GO:0005634 nucleus GO:0010552 positive regulation of gene-specific transcription from RNA polymerase II promoter GO:0043565 sequence-specific DNA binding GO:0003700 sequence-specific DNA binding transcription factor activity GO:0030528 transcription regulator activity GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0003702 RNA polymerase II transcription factor activity GO:0005515 protein binding GO:0003677 DNA binding GO:0007530 sex determination GO:0007417 central nervous system development GO:0007366 periodic partitioning by pair rule gene GO:0007411 axon guidance GO:0007400 neuroblast fate determination GO:0007419 ventral cord development GO:0005524 ATP binding GO:0007377 germ-band extension GO:0048592 eye morphogenesis GO:0048813 dendrite morphogenesis |
InterPro families    | IPR000040 Acute myeloid leukemia 1 protein (AML 1)/Runt IPR013524 Acute myeloid leukemia 1 (AML 1)/Runt IPR008967 p53-like transcription factor, DNA-binding IPR012346 p53/RUNT-type transcription factor, DNA-binding domain |
Orthology group | MCL17547 |
Nucleotide sequence:
ATGCACCTTCCGCACGCAAGCCCTCCGACACCAACGATGGCGGATGTTTACTCCCACATC
CACGAGTACTACCGCCAGACCCACGGTGACTTAGTGCAGACTGGTTCACCAGCTGTATTA
TGCTCAGCTCTGCCCGGCCACTGGAGGTCGAACAAGTCTCTGCCTGTGGCTTTCAAGGTT
GTTGCCTTAGACGACGTCCAGGATGGCACTATAGTTACGATAAAGGCTGGAAATGATGAA
AACGTTATGGCTGAAATGAGAAACTGCACGGCGGTTATGAAAAACCAAGTGGCAAAATTC
AATGATTTGAGGTTTGTGGGACGAAGTGGACGAGGCAAGTCCTTCAGTCTCACCATCACC
ATCAGTACTTTTCCCTCACAAGTGGCAACTTACTCAAAGGCCATCAAAGTCACCGTTGAC
GGGCCGAGAGAACCCAGAACCAAACAGAATTATGGATATGGACACCCGGGAGCATTTAAC
CCGTTCCTGCTGAATCCTGGCTGGTTGGACGCAGCATATTTAAATTACGCTTGGGCTGAT
TACTTCAGACCGCCACAGCTAAGAGATCAAGCTCTTATTAAAGGTGGAGCGGCGCCAATT
ACTACTCCTCCAGTTGCGTTACCAGGAGCCGAACTGTTTCCGTTTCCTCCAATGATGGGA
ACTTTACCTCCAGGTGGACTGATACCACCGCCAGGGGCATTTTTACCACCGAACGGGATG
CTGCCATTTTCTCCTCATCCGGCGGACCTTGCACTGAAAAATTTACCGCAAGATATAAAA
AATGGCGTCAGTCCTTATGACGCTCTAAGGCATTTCCAAAGCAACGTCCTATCGATAGAC
ACTTCAAGCGCTCGATTGTCTCCAACAAGCAGTAGACAGAGCGGCAGCCCACGAAGCGTT
ATAAATACCAGTCCAAGGTCGAAAGCTGATTCTAAATCCGAAATTAATTCAACACACGAA
GCAACAATATCCGACGAATCGGATGAGGAACAGATAGAAGTCGTGAAATCAGCTTTCCAT
CCCACGCGACCAGCGAACGTTGAGCTCCAGGAGATGAAGCAAGTGCAAGCTGCAGATTCA
ACCGTATCGGATCGACCTCGTGTACGTAATGAACTCAAAGCACCTTTACATCGTACTACG
CGAGTTCTATCGACTAGTCCGACGTCGACGAAAATTTCCAACGGTGCTATATCAACGCAT
AAATCAGTATGGCGACCGTATTAA
Protein sequence:
MHLPHASPPTPTMADVYSHIHEYYRQTHGDLVQTGSPAVLCSALPGHWRSNKSLPVAFKV
VALDDVQDGTIVTIKAGNDENVMAEMRNCTAVMKNQVAKFNDLRFVGRSGRGKSFSLTIT
ISTFPSQVATYSKAIKVTVDGPREPRTKQNYGYGHPGAFNPFLLNPGWLDAAYLNYAWAD
YFRPPQLRDQALIKGGAAPITTPPVALPGAELFPFPPMMGTLPPGGLIPPPGAFLPPNGM
LPFSPHPADLALKNLPQDIKNGVSPYDALRHFQSNVLSIDTSSARLSPTSSRQSGSPRSV
INTSPRSKADSKSEINSTHEATISDESDEEQIEVVKSAFHPTRPANVELQEMKQVQAADS
TVSDRPRVRNELKAPLHRTTRVLSTSPTSTKISNGAISTHKSVWRPY