New model in OGS2.0 | DPOGS213448  |
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Genomic Position | scaffold4258:- 6485-8954 |
See gene structure | |
CDS Length | 1257 |
Paired RNAseq reads   | 1017 |
Single RNAseq reads   | 3821 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008779 (4e-14) |
Best Drosophila hit   | CG5931 (3e-157) |
Best Human hit | U5 small nuclear ribonucleoprotein 200 kDa helicase (1e-154) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC016163 [Tribolium castaneum] (2e-170) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC016163 [Tribolium castaneum] (4e-163) |
GeneOntology terms    | GO:0030532 small nuclear ribonucleoprotein complex GO:0005682 U5 snRNP GO:0008380 RNA splicing GO:0003724 RNA helicase activity GO:0004004 ATP-dependent RNA helicase activity GO:0005681 spliceosomal complex GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0005634 nucleus GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome |
InterPro families    | IPR023290 Sec63-domain IPR004179 Sec63 domain |
Orthology group | ND |
Nucleotide sequence:
CTGCACTGCTACGAGCAGTACCCGGTGACGACGGTGCTGCAAATGCTGGGCCGGGCCTGC
AGACCTCTGGAAGACGAGCACGCAGTCGCAGTACTCATGTGCGCTCAGCATCACAAGACG
TTCTTCACGAAGCTTCTCAACGACTGCCTACCCTTAGAGGTATCTACTCCACATACACAT
CTCTCCGATCACCTGTCAGAGCTGGTCGAGTCAACCCTATCAGATCTGGAACAGTCGAAG
TGTATAGCCATCGAGGATGATATGGACCTGCAGCCTCTCAACCTTGGAATGATAGCCTCC
TACTACTACATAAACTACACTACTATAGAACTGTTCAGCTTGTCTCTGACTTCAAAGACG
AAGATCCGAGGTCTTCTGGAGATCATATCTTCAGCGGCGGAGTACTCCGAGCTGAGCGTC
AGGCATAGAGAGGAGAACGTCATCAAGACGCTCGCTGCCAAGGTGCCTCACAAATCGTCA
TCGCCGACAGTCCGCTACAACTCCCCCCACGTGAAGGCGCACGTGTTATTACAAGCTCAT
CTCTCAAGGATGCAACTTCCGGCGGAACTGCAGGCTGATACCGCCATTGTGCTCACAAAG
GCTATACGTTTGATCCAGGCGTGTGTGGACGTGGTTTCCAGCAGTGGCTGGCTATCCCCA
GCTGTTGCGGCTATGGAACTAGCGCAAATGGTGACCCAGGCTATGTGGGCGAAGGACTCC
TACCTCAAACAGCTGCCTCACTTCACCCCGGAACTGCTCCAACGGTGTTCCGAACGCGGG
GTTGATACGGTCTTCGATGTCATGGAACTCGAGGATTCAGCTCGCACGGAGCTGCTTAGG
CTCACGCCGACGGAAATGGCGGATGTGGCTAGATTCTGTAACAGATATCCGAATGTTGAG
CTGAGTTATGAGGTGTTGGATAGTAGGAGAGTGAGGAGTGGTGGGCCGGTAGTGTTGAAG
GTTACGTTGGAGAGGGAAGACGAGGTGACGGGGCCGGTCGCAGCGCCTAGATTCCCGCAG
AAGAGGGAGGAAGGTTGGTGGGTGGTGGTTGGAGAGCCGAGGACCAACAGCCTGTTGTCC
ATCAAACGGGTTCAGCTTGGGCGATCAGCTACTTTGAAGCTGGACTGGCTAGCCGGCGCG
CCGGGACGACACACCTACACTCTGTACTTCATGAGCGACGCTTACCTGGGAGCGGATCAG
GAATACAAGTTCAATGTGGATGTGTCCGATGCCAGGTCACCGGATAATGCAGACTGA
Protein sequence:
LHCYEQYPVTTVLQMLGRACRPLEDEHAVAVLMCAQHHKTFFTKLLNDCLPLEVSTPHTH
LSDHLSELVESTLSDLEQSKCIAIEDDMDLQPLNLGMIASYYYINYTTIELFSLSLTSKT
KIRGLLEIISSAAEYSELSVRHREENVIKTLAAKVPHKSSSPTVRYNSPHVKAHVLLQAH
LSRMQLPAELQADTAIVLTKAIRLIQACVDVVSSSGWLSPAVAAMELAQMVTQAMWAKDS
YLKQLPHFTPELLQRCSERGVDTVFDVMELEDSARTELLRLTPTEMADVARFCNRYPNVE
LSYEVLDSRRVRSGGPVVLKVTLEREDEVTGPVAAPRFPQKREEGWWVVVGEPRTNSLLS
IKRVQLGRSATLKLDWLAGAPGRHTYTLYFMSDAYLGADQEYKFNVDVSDARSPDNAD