New model in OGS2.0 | DPOGS211087  |
---|---|
Genomic Position | scaffold1895:+ 3440-11522 |
See gene structure | |
CDS Length | 2313 |
Paired RNAseq reads   | 5370 |
Single RNAseq reads   | 14380 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002967 (0.0) |
Best Drosophila hit   | CG4389, isoform A (0.0) |
Best Human hit | trifunctional enzyme subunit alpha, mitochondrial precursor (0.0) |
Best NR hit (blastp)   | hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] (0.0) |
Best NR hit (blastx)   | hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0016508 long-chain-enoyl-CoA hydratase activity GO:0016509 long-chain-3-hydroxyacyl-CoA dehydrogenase activity GO:0016507 fatty acid beta-oxidation multienzyme complex GO:0006635 fatty acid beta-oxidation GO:0050662 coenzyme binding GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity GO:0055114 oxidation reduction GO:0004300 enoyl-CoA hydratase activity GO:0005811 lipid particle GO:0005875 microtubule associated complex |
InterPro families    | IPR008927 6-phosphogluconate dehydrogenase, C-terminal-like IPR016040 NAD(P)-binding domain IPR013328 Dehydrogenase, multihelical IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding IPR001753 Crotonase, core IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal IPR012803 Fatty acid oxidation complex, alpha subunit, mitochondrial |
Orthology group | MCL12226 |
Nucleotide sequence:
ATGACATCTGTTGTCAACTCAGATGCCCCTCTTCCCCTCCTACCACCTACTGGCTGGCCC
TGTTTGCTCCTCATCTGTCGAGAAAGTTTAGGTTCAAAGTCTGGAACCTTGGCGGCTGCT
GCAACGTCTCATGTCCACACCAAGTGCAAATTGGTTAATGGTGTATATGTCATAACACTT
GATTCTCCAAATGTTAAGGTTAATTCCTTAAATCAAGACGTAATGGATGAAGTTAAATCA
ATCATTCAAGAAGTACAAAGTAATCCGGCAATCGAAGCTGCCGTTTTAATATCCGGCAAA
CCTGGGTGCTTTATAGCCGGTGCCGATATCAACATGATTGAACGCTGTAAAACAAAGGAA
GAAGTAGTTGCGTTATCCAAAAATGGTCATGACATCTTTAGGAGCATAGAAAATTCTACA
AAGCCTTATGTAGCAGCCATTCAAGGATCATGTCTCGGGGGCGGTCTGGAAACCGCATTG
GCTTGTAAATACAGAATTGCTGTGAAAGATAACAAAACAGCTCTGGCACTTCCCGAAGTT
ATGCTAGGTTTATTGCCTGGAGGTGGCGGCACTGTTAGGATGCCCAGACTAACTTCAGTT
CCTACGACTTTGGATCTTGCTCTGACTGGGAAAACTGTCAAGGCCGACAAAGCGAAGAAA
CTTGGGATGGTTGATTTGTTGGTATCTCCATTGGGGCCAGGCTTAGGACAACCCGAAGCT
AACACAATGGCATATTTAGAAAAAGTCGCCGTTCAAATTGCCAAAGACATTGCATCCGGA
AAAATGAAGGTAGAGAGGGGCAAGAAAGGTGTCGTCAATCAATTGATGGCCAGCGTCATG
GATGTAGAGTTTGTCAAGAATTTCATCTTCAAGAAAGCCAAGGATCAAGTCATGAAAGCA
TCTCGTGGGTTATACCCAGCACCCCTCAAGATTCTTGAAGTCGTCAGGACTGGTGTAGAT
AAAGGTCAGGCTGCGGGCTACGAGGCGGAAGCCCAGGGCTTCGGTGAACTGGCCATGACG
CCCCAGAGCAAAGGACTCATTGGACTCTTCAGAGGACAGACCGAGTGTAAGAAGAACAGG
TTCGGCAAACCTCAGAATGAAGTTAAGACGATCGGCGTCCTAGGCGCGGGTCTGATGGGC
GCTGGCATAGTTCAAGTGTCAGTGGACAAGGGTTACCAAGTAGTGTTAAAGGACGCCACT
ACAGCTGGCCTCTATCGCGGTATGGGTCAGATTCAAAATGGACTAGTCAACGCTGTCAAA
AGGAAGAGGATCTCATCGTTGCAAAAGGACAAGTTTGTTTCGAACCTATTGCCGACGTTA
GACTACAACAAGTTCAAAAACGCGGACTGCGTTATTGAAGCGGTGTTCGAAGACATCAAT
ATCAAGCACAAAGTTATCAAGGAATTGGAAGCGGTTGTGCCCAAGCATTGTGTACTGGCC
ACGAATACTAGTGCCATACCCATAACCAAAATCGCAGCCGGCAGTAGCCGCCCTGAGAAA
GTTATTGGCATGCACTATTTCTCCCCCGTGGACAAAATGCAGCTGTTAGAGATCATCCGT
CATCCTGGGACGTCTGATGACACTGCTGCGGCGGCTGTTGCTGTTGGCCTCAAACAGGGC
AAGGTTGTCATCACTGTCGGTGACGGACCGGGCTTCTACACGACAAGGATACTGTCCACC
ATGCTTAGCGAAGCCATTAGGCTGTTACAAGAGGGCGTTGATCCCAAGGATCTGGACAGC
ATGACAAAGCAGTTCGGCTTCCCCGTGGGCGCGGCCACACTCGCCGACGAGGTTGGCATT
GACGTTGGAGCACACATCGCTGTCGACTTAGCCAAGGCGTTTGGTGACCGCATCAGCGGT
GGGGATCTCAACATTATGCAAGACTTAGTCACAGCTGGCTTCATGGGCAGGAAGTCCGGC
AAAGGTTTCTACGTTTATGAGAAAGGCACCAAGAACAGGGATGTCAACCAAGATGCTGTA
AATATATTAAAGACTAAATACTCTCTGGAACCAAAAGGAGCAAATACTGTCGAAGACCAG
CAGCTGAGGATGGTGTCCAGATTTGTCAATGAAGCAGTTTTATCACTCGAGGAGAAAATT
TTACACAGTCCGCTTGAAGGTGACGTAGGCGCGGTCTTCGGTCTTGGATTTCCGCCATTC
ACTGGTGGACCATTCAGATGGGTAGACCAATTCGGTGCTGGAAAACTGGTAGCAAAAATG
GAGGAATTCCAAGCTCTATATGGCGCTCCGTTCAAACCCGCACAGACCCTGGTTGACATG
GCCAAAGATAGCAGCAAGAAATTCTATAACTAA
Protein sequence:
MTSVVNSDAPLPLLPPTGWPCLLLICRESLGSKSGTLAAAATSHVHTKCKLVNGVYVITL
DSPNVKVNSLNQDVMDEVKSIIQEVQSNPAIEAAVLISGKPGCFIAGADINMIERCKTKE
EVVALSKNGHDIFRSIENSTKPYVAAIQGSCLGGGLETALACKYRIAVKDNKTALALPEV
MLGLLPGGGGTVRMPRLTSVPTTLDLALTGKTVKADKAKKLGMVDLLVSPLGPGLGQPEA
NTMAYLEKVAVQIAKDIASGKMKVERGKKGVVNQLMASVMDVEFVKNFIFKKAKDQVMKA
SRGLYPAPLKILEVVRTGVDKGQAAGYEAEAQGFGELAMTPQSKGLIGLFRGQTECKKNR
FGKPQNEVKTIGVLGAGLMGAGIVQVSVDKGYQVVLKDATTAGLYRGMGQIQNGLVNAVK
RKRISSLQKDKFVSNLLPTLDYNKFKNADCVIEAVFEDINIKHKVIKELEAVVPKHCVLA
TNTSAIPITKIAAGSSRPEKVIGMHYFSPVDKMQLLEIIRHPGTSDDTAAAAVAVGLKQG
KVVITVGDGPGFYTTRILSTMLSEAIRLLQEGVDPKDLDSMTKQFGFPVGAATLADEVGI
DVGAHIAVDLAKAFGDRISGGDLNIMQDLVTAGFMGRKSGKGFYVYEKGTKNRDVNQDAV
NILKTKYSLEPKGANTVEDQQLRMVSRFVNEAVLSLEEKILHSPLEGDVGAVFGLGFPPF
TGGPFRWVDQFGAGKLVAKMEEFQALYGAPFKPAQTLVDMAKDSSKKFYN