New model in OGS2.0 | DPOGS202902  |
---|---|
Genomic Position | scaffold334:- 55690-61164 |
See gene structure | |
CDS Length | 711 |
Paired RNAseq reads   | 2329 |
Single RNAseq reads   | 5633 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004175 (2e-66) |
Best Drosophila hit   | adam (5e-22) |
Best Human hit | eukaryotic translation initiation factor 3 subunit J (2e-16) |
Best NR hit (blastp)   | eukaryotic translation initiation factor 3 subunit J [Bombyx mori] (4e-76) |
Best NR hit (blastx)   | eukaryotic translation initiation factor 3 subunit J [Bombyx mori] (2e-55) |
GeneOntology terms    | GO:0003743 translation initiation factor activity GO:0006413 translational initiation GO:0005852 eukaryotic translation initiation factor 3 complex |
InterPro families    | IPR023194 Eukaryotic translation initiation factor 3-like domain IPR013906 Translation initiation factor eIF3 subunit |
Orthology group | MCL12480 |
Nucleotide sequence:
ATGGACGTGTCGTGGGATGCTGATAATTTTGAACCAAAACTTCCGACCACGTTGGCTTCC
AATAAATGGGAAGGCGAGGACGAGGAAGAAACAGTCAAGGACAGCTGGGAGGATGAAGAA
GAAGAAAAGAAAGACGAAGAAAAGAAAGAAACCGTGCCGCCTCCTCCGAAACCTAAAAAG
AAAATTCTAGATAAAATTGCTGAAAAAGAGCGTCTGGAACGTCAGAAGTCAGTGAAACAA
GTTGTCGAGAAAGAAGAATTGACCCCGGAAGAGAAGCTGGCTGAGAAGCTGCGTCAGCAG
AAATTACAAGAGGAATCCGATTTACTGCTGGCCTTGGAGACATTTGGTGTAACAGACGGA
GCCGGTAAACTAGATTGCTTCCATCCAACAAATAAACAGGAGTTCACAGATTTTGCAGAG
CTTCTGTGCAAAAAAATCAACATTTACAAAGCCAAGGATGAATTTCCCGGATTTGTTGAT
GAGCTGGTCAAGAATATTATAGTACAAATGTCGTCCGCGGATATTAAGAGGATAAAGATG
ACAGTCGACAATCTGTACATTGAAAAACAGAAAGCCGAGAAAAACGAAAAGGCCAAGAAA
CCTAACAAGGGGAAGGGGAAGGCTAAGTTAAAAGTGGAGGGGGAGAGTGCTCACTTGAAC
CAGTACGAGGCCTATGGCACTTTTGACGACGATTTCGACGACTTTATGTAA
Protein sequence:
MDVSWDADNFEPKLPTTLASNKWEGEDEEETVKDSWEDEEEEKKDEEKKETVPPPPKPKK
KILDKIAEKERLERQKSVKQVVEKEELTPEEKLAEKLRQQKLQEESDLLLALETFGVTDG
AGKLDCFHPTNKQEFTDFAELLCKKINIYKAKDEFPGFVDELVKNIIVQMSSADIKRIKM
TVDNLYIEKQKAEKNEKAKKPNKGKGKAKLKVEGESAHLNQYEAYGTFDDDFDDFM