| New model in OGS2.0 | DPOGS211901 |
|---|---|
| Genomic Position | scaffold492:+ 41004-42873 |
| See gene structure | |
| CDS Length | 1707 |
| Paired RNAseq reads | 671 |
| Single RNAseq reads | 1818 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000995 (2e-15) |
| Best Drosophila hit | CG2158 (1e-39) |
| Best Human hit | nuclear pore complex protein Nup50 isoform b (1e-27) |
| Best NR hit (blastp) | nucleoporin [Aedes aegypti] (1e-54) |
| Best NR hit (blastx) | PREDICTED: similar to nucleoporin 50kDa [Tribolium castaneum] (3e-47) |
| GeneOntology terms | GO:0005643 nuclear pore GO:0046907 intracellular transport GO:0006911 phagocytosis, engulfment |
| InterPro families | IPR011993 Pleckstrin homology-type IPR000156 Ran binding protein 1 IPR015007 Nuclear pore complex, NUP2/50/61 |
| Orthology group | MCL14365 |
Nucleotide sequence:
ATGTCTACGAAAAGGCAGGCTCCAACAGAATTAAATCATGAGAACTGGAATGACGAAGAT
CCAGTGGAAGAAGACCAGACTGGTGGTTTTGCTATAGCTCCTAAGGAGGTTCTTGAAAAG
CGTGTGATAAGGACCGCTAAAAGACGCTCTCAAGCCATCAGCGGTGAGGCTAAGAAGAGT
GTTTTTAGTGGCTTCAGTGGATTTAACAAAATTCAGCACTCATCATTTGATTTCTTATCA
AATTTAACCAATGGCAGTAAGAATAATGGGAGTCTTACATCTACAAGTGAGACAGCTGTT
TCATCGAGTTCCGTCAACAGCAACCCATCAAATACGATAAGCAGTGGAATATTCAGTTTA
TCAGGAACTTCAACTCCGACAAAGGCAGCTTTTGGCAAACCACCAGCAGATTCTCCATTT
GGTGGTACATCAGAGACCACTGTTACTACTAGCTCTTTATTTTCGCAGTCTGTGTTTACG
ACATCCAAAGCAGATTCAACTGTTAGTGATAATCCATTTAAAATCCAGTCAACTGTGACC
TCACCCATCGCAGGTGATTTTGGCAAAAAAACTAACCCTGCGTCAGATAAACCCTTATCT
CAGGTCTCCTCGACTATATTTGGAACACCATCAACCAGTGCTAACAGCGGTAACACATTA
TTTTCATCTACATCTAACAACTTTGCAACATTCAAGAAGCAAACACCACAGATATTTAAC
AAGACAAGTGATGCTAAGAAACCTGAAAGTAAACCGGAAAGTAAAAGTAGTCTAATGACT
TACCACAACAAGCTTAAGGGCCTTAATGAGTCGGTATCGGACTGTATCAGAAAACATGTA
GAAGAGATGCCAATATGTATTTTAACTCCAATCTTCAAGGATTATGAAAAATATCTAAAA
GATATTCAAGAAGAATATGAGAAAAATAAGGAACAGGAGAAGAAAGACAGTGCCAAGTCT
GAACCTGAGCCAAAACAGAATACCAGCCCTGAGAAATCTGTGTCAGTTAGTAAGAGTACA
ACATCAACATTATTCTCAGGGAATAAATCATCCATATTTGCCGCTGTAACATCTTCACCG
AAGACATCTAACACAACTTCAGTCTTCAATACTGGCACCAGCATCGCAAGCTGTACATTT
TCGACTACAACTACTCCGAGTACTGGATTTTCCTTTGGTATTAAACCTAATACAAACACG
TCTCCCTTAACGTCTGCTACAACAACCAATGGTAACACACCATTCTCTTTTGGGATGGGC
AAACCTTTCAGCTTTAGCACAAATGTAAATACACCGAAACCTGAAGAACCAGCTAATGAA
GCAAACGATAATGAAGATGTACCACCTAAAGTTGAATACACACCGATAGTAGAAGAGAAC
AGTGTTTATGATAAAAAATGTAAAATATTTGTCAAAAAAGACGGCAATTTCATTGATAAA
GGTGTCGGTACTCTGTATATCAAGAAAGTAGAAGACAGCGGGAAGCATCAACTGCTGGTC
CGAGCTAACACAGCTATCGGAAACGTCCTACTCAATTTAATTTTGTCTTCGGGCGTTCCG
ACCCAGAGAATGGGCAAGAACAATGTGATGATGATCTGCATCCCCACTCCGGACGCCAAA
CCTCCACCGACCTCTGTTCTGGTCCGAGTGAAGACATCAGAGGAAGCCGATGAATTGTTA
GAAACTTTAAACAAATACAAAGTCTGA
Protein sequence:
MSTKRQAPTELNHENWNDEDPVEEDQTGGFAIAPKEVLEKRVIRTAKRRSQAISGEAKKS
VFSGFSGFNKIQHSSFDFLSNLTNGSKNNGSLTSTSETAVSSSSVNSNPSNTISSGIFSL
SGTSTPTKAAFGKPPADSPFGGTSETTVTTSSLFSQSVFTTSKADSTVSDNPFKIQSTVT
SPIAGDFGKKTNPASDKPLSQVSSTIFGTPSTSANSGNTLFSSTSNNFATFKKQTPQIFN
KTSDAKKPESKPESKSSLMTYHNKLKGLNESVSDCIRKHVEEMPICILTPIFKDYEKYLK
DIQEEYEKNKEQEKKDSAKSEPEPKQNTSPEKSVSVSKSTTSTLFSGNKSSIFAAVTSSP
KTSNTTSVFNTGTSIASCTFSTTTTPSTGFSFGIKPNTNTSPLTSATTTNGNTPFSFGMG
KPFSFSTNVNTPKPEEPANEANDNEDVPPKVEYTPIVEENSVYDKKCKIFVKKDGNFIDK
GVGTLYIKKVEDSGKHQLLVRANTAIGNVLLNLILSSGVPTQRMGKNNVMMICIPTPDAK
PPPTSVLVRVKTSEEADELLETLNKYKV