New model in OGS2.0 | DPOGS205098  |
---|---|
Genomic Position | scaffold616:+ 28455-29732 |
See gene structure | |
CDS Length | 885 |
Paired RNAseq reads   | 653 |
Single RNAseq reads   | 2811 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008210 (3e-112) |
Best Drosophila hit   | CG6509, isoform A (5e-08) |
Best Human hit | syntenin-1 isoform 3 (3e-69) |
Best NR hit (blastp)   | syndecan binding protein [Bombyx mori] (4e-123) |
Best NR hit (blastx)   | syndecan binding protein [Bombyx mori] (5e-117) |
GeneOntology terms    | GO:0005137 interleukin-5 receptor binding GO:0005515 protein binding GO:0005895 interleukin-5 receptor complex GO:0007265 Ras protein signal transduction GO:0016020 membrane GO:0042043 neurexin binding GO:0042470 melanosome GO:0046982 protein heterodimerization activity GO:0047485 protein N-terminus binding |
InterPro families   | IPR001478 PDZ/DHR/GLGF |
Orthology group | MCL17170 |
Nucleotide sequence:
ATGTCGCTCTACCCATCGCTGGAAGATATGAAGGTAGACAAAATGGTTAGAGCTCAAATG
GCTCAAAATCAGGCTCCATCAGCCTATCCTCCTGCTTATCATCAACCAGGATATCCTCAG
ATCACTGCCCCTACTCCTAGTGTCCCAACAGCGATGTATCCGGCTTTGGGCGAATATATG
GGACTGGAGCTATCTCATGATGTTATTGCCCTAAATATGCCCGAATATCAAGTACAAACT
CTTCAAGCTGGAGGAGCAGGAAGTAATTTGATTGCTCCACTTTCGTCTCAGTCACCTAGT
CTGGCAAAGGCTATAGTGACTCATGGGATAAGACAAGTCATTATGTGTAAAGACAGAGAT
GGCAAGTGCGGTTTAAGACTTCACTCTGTTAACAATGGTGTATTTGTTTGCTATGTGGCT
GCTGGGAGCCCAGCAGCACTCGCTGGTTTACGATTCGGTGACCAAATCTTGGAAATTAAT
AATGTAGCTCTAGCTGGTATGTCTATGGATCAATGTCATGCTATATTAAAGAAGGCCCCC
ACTAATGGCATTACAATGGCTGTCCGTGACAGGCCATTCGAGAGAACAGTAACACTTCAC
AAAGATTCCCTCGGTCATGTTGGTTTTCAATTCAAGGATGGTAATATTGTGGGGCTAGTG
AAAGATTCATCGGCGGCACGCAATGGCCTGTTGACAGATCATCAGTTATTGGAAATAAAC
ACTATAAATGTGGTCGGCATGAAAGATAAGGAGATATCAAGGGTTATTGAAGCGAGCCCA
TCTGTTGTTAACATAACTATAATTCCGCAGTATATTTACAAGCATATGATAAGCAAAATG
TCGAGTTCATTGTTTAAGGAGATTGATCGCACACCTGCAGTATAA
Protein sequence:
MSLYPSLEDMKVDKMVRAQMAQNQAPSAYPPAYHQPGYPQITAPTPSVPTAMYPALGEYM
GLELSHDVIALNMPEYQVQTLQAGGAGSNLIAPLSSQSPSLAKAIVTHGIRQVIMCKDRD
GKCGLRLHSVNNGVFVCYVAAGSPAALAGLRFGDQILEINNVALAGMSMDQCHAILKKAP
TNGITMAVRDRPFERTVTLHKDSLGHVGFQFKDGNIVGLVKDSSAARNGLLTDHQLLEIN
TINVVGMKDKEISRVIEASPSVVNITIIPQYIYKHMISKMSSSLFKEIDRTPAV