New model in OGS2.0 | DPOGS214267  |
---|---|
Genomic Position | scaffold805:- 29385-33763 |
See gene structure | |
CDS Length | 2958 |
Paired RNAseq reads   | 2238 |
Single RNAseq reads   | 5754 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001336 (1e-179) |
Best Drosophila hit   | CG10077, isoform A (9e-176) |
Best Human hit | probable ATP-dependent RNA helicase DDX17 isoform 3 (6e-179) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC010324 [Tribolium castaneum] (0.0) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC010324 [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0003676 nucleic acid binding GO:0004386 helicase activity GO:0005524 ATP binding GO:0008026 ATP-dependent helicase activity GO:0016787 hydrolase activity GO:0000166 nucleotide binding |
InterPro families    | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR014014 RNA helicase, DEAD-box type, Q motif |
Orthology group | MCL10086 |
Nucleotide sequence:
ATGGGACGTGGAAGGGATCGCAGTCGAGATAGACGTCGGAGCCGTAGTCGTAGCCGGAGC
AGGAGTCGCAGCCGAAGCCCTCGCTACGGTCTTGGTGGAGGTGGTGGTGGTGGTGGATAT
AGCGGAGGCGGACGCAGGAGTAATCCCGGAGCCAATCTGCGCAAACCGAAATGGGACCTT
AACAGGCTTAAGCCTTTTAAGAAAGATTTCTACGTGCCTCACCCAGATGTTGAAAGTAGA
CTTGAATCAGATGTCGAGGCTTGGAGGAGTGAAAATGAAATAACGTTGAAAGGGCGTAAT
ATACCAAAACCCACACTAACTTTCGATGAAGCCGGATTTCCTGATTATGTTATGGATGAA
ATTGATAAAATGGGATTTTCCAAACCAACACCAATTCAGGCACAAGGTTGGCCTATAGCC
TTAAGTGGATGTGATATGGTTGGCATTGCTTCGACAGGTTCAGGAAAAACTTTATCTTAT
ATTTTACCTGCAATAGTTCACATTAATAATCAGCCCAAGTCAAGTAGAGGAGATGGACCA
ATTGCTTTAGTATTGGCTCCAACAAGAGAACTCGCCCAACAAATTCAAGAAGTGTGTGAT
AAGTTCGCTAACACCTCCAAAATTCACAACACATGTTTGTTTGGTGGAGCTCCCAAAGGT
CCACAAGCTAGAGATTTGGATGCTGGTGTTGAAATTGTAATTGCAACACCGGGCCGTCTA
TTAGACTTTTTAGAGAGTGGTCGGACAAATCTTAAAAGATGCACATATTTGGTACTTGAT
GAAGCAGATCGAATGTTGGATATGGGATTTGAACCTCAAATTAGAAAAATCATAGAACAA
ATACGACCTGATAGACAAACACTCATGTGGTCTGCTACATGGCCTAGAGAAGTACAGAGT
TTAGCAGCAGAATTTTTGAAAGATTATTTACAAATCAATGTTGGTTCCTTACAATTAGCA
GCCAATCACAACATCCTTCAGATCATTGATGTTTGTATGGAATATGAAAAAGAAACTAAA
CTTAGTACATTGTTAAAAGAAATTATGGCCGAAAAGGAAAATAAAACTATCATATTCATT
GAAACAAAACGCAGAGTTGATGATATCACAAGAAAAATGAAACGCGATGGATGGCCCGCT
GTGTGTATTCATGGTGATAAGTCACAAAATGAACGTGACTGGGTATTACAAGATTTCCGT
AGTGGAAAAGCACCCATTCTTGTAGCTACAGATGTTGCTGCCAGGGGTTTAGATGTCGAT
GACGTAAAGTTTGTTATTAATTTTGACTATCCTAGTAACTCTGAAGATTATGTGCATAGA
ATTGGAAGAACGGGTCGAACTAATAAAACCGGAACTGCTTATACGTTTTTCACACCATCG
AATGCGGCAAAGGCGGCAGATTTGGTTTCAGTGCTAAAAGAAGCCAAACAAGTCGTGAAT
CCTAAATTACAAGAGTTAGCCGAACGCGGCGGTGGCGGTGGACGAAGACACCGTGGTCGT
GGCGGTAGATATCGCAGAGGGGGACGCCGTTCGAGGTCCCGTTCTCGCTCGCGTGATCGT
CGTCGGCGTTCACGTACACGATCCCGTTCCCGAGACCGCCGTCGTCGCAGACACAGCTCC
TCGCGTTCATCACGCAGCAGGTCGTCGAGATCGTCGAGAAGCCATTCACGCTCGCGCTCC
AGATCAAGAAGCCGCTCTCGCTCAGGCAAGTGCAGCCCACTGAAGGATAATACTGTTGGG
CCTCAGCCAGCACCCCAGGCACTTCTACCGACGCCGAAACCACTTCTGCCTACCCCGATC
GGTCCGCAGCTACCTCCCCCACATTTCGATAAACACACTAGTAAAAATTCTTTACCGCCT
TCTAATGGTGACGACGAATCTCGCTCAAATAAAGATCTCTCCCAATGTTATAATAAAACT
AACAGTCACAATAGTAGCAATAACAAACAAACCCACAATGACAACAGGTTACAGCAACAG
CAACCTGTCAACTCAATTCCGCCTTTGATGGCCATAAATCCTCAGATGAATGTATGTGTT
CCGCCACCACCTCTTAATGGACAAGGCTTTGTTATGCCTCCATATTTTCCTTCCGACCAA
TATGGAATGATGATGCCTAATTTCGGCCCAAATCCTATGCTCAATGGACACAGTTGGGGA
GCTCCGCCTCCTCCGCCTCCACCCCCTCCTCCGTCTTCAGATCCCTCTAACGGGTCTCAA
AATAACTATAATTATGGTCAAAGCGGCTCGGGACAAAGTAGCCTGGAGTCAGATTCCAGA
AAGCGGGGTGGCCGTTCTGGTGGCCTCGGAAGTTCGAGTTCATACGGCTTGGGCTCTGGA
AGTGGTGGCCTTAGCTCTGCTGGAGGTGCCGGTTCCTGCGGCAGGGGCCTGGGCCTTGCC
GATGGCCCCACTCAAGGTGGGGGCCTCGGCACTGGTGGCCTAGGGTCCGATAGCCTCTAC
GGAGGTGGCGGTGGCCTCGGCTCCGACGACGGCCAAGGCAGTCAACGGTCGCGCGGCGGC
CGCGATCGGCGGCGACGAGGCAGAGGACGGGACTACGACGACCACAACTCGGATAATCCG
AGCGGTGGTCTCGGCTCTTACGGCTCGGGCGGCTTCGAAGGTGGCCTGGGCCAGGCCTCT
GGCGGTCCCAGTGTGCCCCATGGGAGCCTATTGCCGCGCATGCTGCCGCAGAATACTGGT
GACTTCGGTGGACAACAAAACGCTAACTTTACCGCTTTCGGTTCTTATGGGCCTAAGTTT
AAAAAAAATCAGGGTGGTTACGATAACGGAGATTACGACGAGGGTCCCGTTAACGGGGTC
GAATATTACGGCCACCAAAATATGGGACCAGGCCGACCGTTAAATTCTAACATGGATCGA
GGTGTTTTTAACGATGCGCAGGCATACGGCTCCATGGGGTACAGAAATGACCGCCAGGGC
AATCGCCAACGGCGGTGA
Protein sequence:
MGRGRDRSRDRRRSRSRSRSRSRSRSPRYGLGGGGGGGGYSGGGRRSNPGANLRKPKWDL
NRLKPFKKDFYVPHPDVESRLESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDE
IDKMGFSKPTPIQAQGWPIALSGCDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGP
IALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRL
LDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS
LAAEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFI
ETKRRVDDITRKMKRDGWPAVCIHGDKSQNERDWVLQDFRSGKAPILVATDVAARGLDVD
DVKFVINFDYPSNSEDYVHRIGRTGRTNKTGTAYTFFTPSNAAKAADLVSVLKEAKQVVN
PKLQELAERGGGGGRRHRGRGGRYRRGGRRSRSRSRSRDRRRRSRTRSRSRDRRRRRHSS
SRSSRSRSSRSSRSHSRSRSRSRSRSRSGKCSPLKDNTVGPQPAPQALLPTPKPLLPTPI
GPQLPPPHFDKHTSKNSLPPSNGDDESRSNKDLSQCYNKTNSHNSSNNKQTHNDNRLQQQ
QPVNSIPPLMAINPQMNVCVPPPPLNGQGFVMPPYFPSDQYGMMMPNFGPNPMLNGHSWG
APPPPPPPPPPSSDPSNGSQNNYNYGQSGSGQSSLESDSRKRGGRSGGLGSSSSYGLGSG
SGGLSSAGGAGSCGRGLGLADGPTQGGGLGTGGLGSDSLYGGGGGLGSDDGQGSQRSRGG
RDRRRRGRGRDYDDHNSDNPSGGLGSYGSGGFEGGLGQASGGPSVPHGSLLPRMLPQNTG
DFGGQQNANFTAFGSYGPKFKKNQGGYDNGDYDEGPVNGVEYYGHQNMGPGRPLNSNMDR
GVFNDAQAYGSMGYRNDRQGNRQRR