| New model in OGS2.0 | DPOGS211290 |
|---|---|
| Genomic Position | scaffold535:+ 51788-53125 |
| See gene structure | |
| CDS Length | 558 |
| Paired RNAseq reads | 359 |
| Single RNAseq reads | 977 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012508 (8e-33) |
| Best Drosophila hit | CG10466 (3e-53) |
| Best Human hit | RNA-binding motif protein, X-linked 2 (2e-50) |
| Best NR hit (blastp) | RNA binding motif protein X-linked 2 [Bombyx mori] (2e-69) |
| Best NR hit (blastx) | RNA binding motif protein X-linked 2 [Bombyx mori] (4e-66) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0003676 nucleic acid binding GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR007779 Rotavirus VP2 IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL13729 |
Nucleotide sequence:
ATGAATCCTATGACCAATGTGAAGAATGTTTTAAAATTAAGTGAACGTGAATTAACCGGG
AATTCTAAGAGTTCTTGGCATGATCAATACAAAGATAGTGCCTGGATTTTTGTTGGTGGT
CTCCCTTACGATTTAACTGAGGGGGATGTTATATGTGTCTTTTCTCAATATGGGGAGATT
GTAAACATAAATTTAGTTAGAGACAAAGATACTGGAAGATCAAAAGGTTTTGCATTCATA
TGCTATGAAGACCAACGGTCAACAATACTTGCTGTTGACAATTTAAATAGTATAAAGATT
TTAGGCAGAACAATCCGGGTTGATCATTGTGAGCAGTATCGAGCACCAAATGCAGATATG
AGTAAAATTGATGAAGTAACAGCTGCTATAAGAACTGAAGGGTGCGCCCCAGCTCTACTG
CCTCAGCCTGTACCTGAAGTGCCTGTTAAAACGGAAAAAGAGCATAAAGAAAAAAAGAAG
AAGCACAAAGAAAAAAAGAGCAAAAAGAAAAAGAAGAAAAGAAGTAAATCCAATTCTGAT
TCTAGTGATAGTGATTAA
Protein sequence:
MNPMTNVKNVLKLSERELTGNSKSSWHDQYKDSAWIFVGGLPYDLTEGDVICVFSQYGEI
VNINLVRDKDTGRSKGFAFICYEDQRSTILAVDNLNSIKILGRTIRVDHCEQYRAPNADM
SKIDEVTAAIRTEGCAPALLPQPVPEVPVKTEKEHKEKKKKHKEKKSKKKKKKRSKSNSD
SSDSD