| New model in OGS2.0 | DPOGS210716 |
|---|---|
| Genomic Position | scaffold1755:+ 906-4050 |
| See gene structure | |
| CDS Length | 1230 |
| Paired RNAseq reads | 799 |
| Single RNAseq reads | 2402 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001417 (5e-12) |
| Best Drosophila hit | CG12362, isoform A (3e-13) |
| Best Human hit | E3 ubiquitin-protein ligase RNF19B isoform a (1e-66) |
| Best NR hit (blastp) | PREDICTED: similar to ring finger protein 19 (dorfin) (double ring-finger protein) [Tribolium castaneum] (3e-118) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC011034 [Tribolium castaneum] (2e-82) |
| GeneOntology terms | GO:0005515 protein binding GO:0008270 zinc ion binding GO:0016874 ligase activity GO:0016021 integral to membrane GO:0046872 metal ion binding GO:0016020 membrane |
| InterPro families | IPR002867 Zinc finger, C6HC-type |
| Orthology group | MCL12454 |
Nucleotide sequence:
ATGGCAACATCTCATGCCGATTCGTTTTACACAATCGCTAAATATCATCATGTTCGTCGG
ATAGTGGACAATCCGACGTTATATGATAAGTATGAGGAGTTTTCGGTGAGGAGAGCACTG
GCTGCCGATCCTGATACCAGGTGGTGTCCAGCCCCTGACTGTAGTTTCGCGGTGGTAGCC
AGCGGCTGCGCTTCCTGTCCCAAACTGACGTGCCTGTCGCCGGGCTGCGGAGCCTCGTTC
TGTTACCACTGTAAGGCCGCCTGGCACCCCACACAGACCTGCGACGCGGCGAGGAGGACC
CGCCAGCAGCCGCCACGTCAGCCGCAGCCTTCTTTGGACGAGCACGGCGAGGTGAAGCCC
TGCCCGAGGTGTGCCGTCCTCATAGTGAAGGTGGAGGATGGTTCCTGTAACCACATGGTG
TGCTGCGTCTGTGGGGCCGAGTTCTGTTGGCTGTGTATGAAGGAGGTGTCCGACCTGCAT
TACCTCAGCCCCAGCGGTTGTACGTTCTGGGGCAAGAAGCCGTGGTCGAGGAAGAAGAAG
CTGTTGTGGCAGCTGGGGACCCTGGCGGGGGCTCCGCTGGGTATAGCGGTGGTGGCGGGC
GTAGCTCTGCCTGCTCTACTGGTGGGTCTGCCGCTGTGGGCTGGGCGGAGGGCCCACAGG
AGACTCAGGAAGGCCAGGCCCGCGAGACGCAGGGCCGCAGTCGCCGCCGCCGTCGCTGCT
GCGCTGATAGTCTCTCCCCTGGTGGCGGGGCTGGCGGTCGGGATTGGAGTCCCCATCCTG
TTGTTCTACGTGTACGGCGTGGTGCCGGTTTCCCTGTGCCGCGCGGGGGGCTGCGCCGGC
GGGGGCGAAGCGCCCGAGCGGCCCGAGCAAGCCATCGACCTGGACGCCACCTCCAGGAGA
TTGGAGCCCAGCATCGGTGACGCGTCTCTGTCAGCGGGCTCGGCACAGGCCGAGGCTCGG
GCGGCGTCTTTGGCGGGGCTGGCGGGGTCGCTGGGGGGTCAGGACGCCGCCTCGCCCGCC
GCGCACCGCCTCGAGGTCACCGTGGACGTGTTCAGAGCCTTCGCCTCGGACACCGCGAGC
GCCGCCAGCTGGCCGGACGACCTGCCCTCGACCTCCATCAGCTCGGCGGCGCGGCTCCGC
AACCTGTTCCTGTACGGAGCGCCCCAGCCCCCTCCGGACCCCGAGGCGGGCGGGGTCGAG
CCGCGCCCGGACACTCCACCGACATCCTAA
Protein sequence:
MATSHADSFYTIAKYHHVRRIVDNPTLYDKYEEFSVRRALAADPDTRWCPAPDCSFAVVA
SGCASCPKLTCLSPGCGASFCYHCKAAWHPTQTCDAARRTRQQPPRQPQPSLDEHGEVKP
CPRCAVLIVKVEDGSCNHMVCCVCGAEFCWLCMKEVSDLHYLSPSGCTFWGKKPWSRKKK
LLWQLGTLAGAPLGIAVVAGVALPALLVGLPLWAGRRAHRRLRKARPARRRAAVAAAVAA
ALIVSPLVAGLAVGIGVPILLFYVYGVVPVSLCRAGGCAGGGEAPERPEQAIDLDATSRR
LEPSIGDASLSAGSAQAEARAASLAGLAGSLGGQDAASPAAHRLEVTVDVFRAFASDTAS
AASWPDDLPSTSISSAARLRNLFLYGAPQPPPDPEAGGVEPRPDTPPTS