| New model in OGS2.0 | DPOGS208296 |
|---|---|
| Genomic Position | scaffold200:- 43970-53002 |
| See gene structure | |
| CDS Length | 1842 |
| Paired RNAseq reads | 8713 |
| Single RNAseq reads | 25493 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006463 (5e-77) |
| Best Drosophila hit | eukaryotic initiation factor 4B, isoform B (1e-20) |
| Best Human hit | eukaryotic translation initiation factor 4B (5e-19) |
| Best NR hit (blastp) | eukaryotic initiation factor 4B protein [Bombyx mori] (4e-104) |
| Best NR hit (blastx) | eukaryotic initiation factor 4B protein [Bombyx mori] (1e-73) |
| GeneOntology terms | GO:0000166 nucleotide binding GO:0003676 nucleic acid binding |
| InterPro families | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL15733 |
Nucleotide sequence:
ATGAGCCTCAGCTCAGCGTCCTGGCGCGCCAGCAGGGCCTCGTGCGCCGCCCGCCCCGCA
CCGTTCGACGCGTACCCCATTACAAAGCCTACACTTAACACTACACAACACGACAGTCTA
GCACGCACATCACAACGTAAACACAAACACTATTCACATTTCCCCGTTATCACTGCACCT
TCTACGTCATTCAATGATCGAAAAATTAAAATTTTCGAATGTAATTTTTTAAAATTAAAC
GAATTTTATTGCAAGAAATCAAAGAAAATAAAATGGATCAAAGCCGACGCCACAAACTTT
ATTGCGGAGTCAACCAACATCCCAACAGCAAACAATTGGGCGGACTCCGTAGATGATGAA
CAGAGTTTCGCATACTCGAGCTCGTCCCGCAATCGCGGGCCGATGGTACTGCCGTCAGCA
TCGCGTGCAGCACGTGGAGGTCTGGCTGTGGACGATGAGTCCATACCGCGGCGCCCACCC
TACATCGCTCATATATCAAACCTGCCCTATGATGTCGAAGAAAGTGCCATCATGGAGCTC
TTTGCAGGACTCAAGATCAATAACTTGAGATTGCCAAAGGAGGGAGGCCGTCTTAAAGGC
TTTGGCGATGTAGATTTCGAAGACAGGGAGAGTCTTGTCAATGCTATGAACCTGCCGGAT
TTGATAATCAGCGGAAGGAGACTTAGAATTGAAGTATCGAATCAGGACAATGATCGTCGT
ATGGGCAGAAATAAATCAGATCGAGACAGGGAATATGACCCCGAGCGTACTATGGGAGAC
TGGCGCTCTGGACCTCGGGCCGTGCCTGAACCGACAAGGGGCCGAGATAGAGAGAGGGAG
AGAGACAGAGATAGGGAAAGGGAATCAAGCGCCGATAACCGTCCGGGCGGCTGGCGTGAT
GCTGAGCGACCCGAGCCGCCGCGGGCGCCCTACGGTGGTCGGGATTCATATGGACGAGAC
AGAGAAGGAGGCCGTGAACGCGGCTATGGCGGACGTGATGGATTCCGCACAGCAGATAGA
GACGGATATGGAAGTCGCGAGGGACGAGGTTTCGGCGGTCGAGGATTCGGCGACCGGGAG
CGTGATCGCGACCGCGATCCGCCCAGAGAAGATAAACCTCGCGAGCGTCCTAAATTGAAC
CTGCTACCTCGCACGGTACCACTTGAGCCGGAGCCCGCGCCTGCACCGCCGGCATCAGAA
GATCGTCCAACAGCAAAACCTGTGCCCGCTGAGAAAGTCTTCGGCGCCGCCAAGCCAGTT
GACACGGCTGCCAAGGAACGTGAAATAGAGGAACGTCTACGAAAACAAGAAGAGGAAGCT
AGAAAAGCTGCTGAAGAAAAGGAGCGTTGGGGACGCAGAAATGATCATTCAGGTGATCGT
CGAGGAGGTCCAAGGCGTGATGATCGCGACCGCGGCAGAGATTCCCGCAGCTACAACCGT
GACCGCGCCGACTACTCCCGGGACGATAGGGACAGACGCGACGGTTCCAGAGACGACAGG
GACAAGCGCGACTACTCCAGGGACAATAGGGATAGACGGGACTATTCCAAGGATGACCGG
GACAGGCGGGACTATTCTAAGGACGATAGAGACAGGCGCGACTACAATAAAGATGACAGG
GATAGGCGCGATTACAACAAGGACGATAAAGAAAAGCGCGATTACAACAGGGATGATAGG
GAAAAACGCGATTACAACAGAGATGATAGGGAAAAGCGCGATTACAACAGAGATGATAGA
GAAAAGCGCGATTATAACAGAGATGACAGGGAAAAGCGCGATTACAACAGAGAGATGAAG
GGGGAAAACGCGATATTACAACTGCGATTACAACAGAGATGA
Protein sequence:
MSLSSASWRASRASCAARPAPFDAYPITKPTLNTTQHDSLARTSQRKHKHYSHFPVITAP
STSFNDRKIKIFECNFLKLNEFYCKKSKKIKWIKADATNFIAESTNIPTANNWADSVDDE
QSFAYSSSSRNRGPMVLPSASRAARGGLAVDDESIPRRPPYIAHISNLPYDVEESAIMEL
FAGLKINNLRLPKEGGRLKGFGDVDFEDRESLVNAMNLPDLIISGRRLRIEVSNQDNDRR
MGRNKSDRDREYDPERTMGDWRSGPRAVPEPTRGRDRERERDRDRERESSADNRPGGWRD
AERPEPPRAPYGGRDSYGRDREGGRERGYGGRDGFRTADRDGYGSREGRGFGGRGFGDRE
RDRDRDPPREDKPRERPKLNLLPRTVPLEPEPAPAPPASEDRPTAKPVPAEKVFGAAKPV
DTAAKEREIEERLRKQEEEARKAAEEKERWGRRNDHSGDRRGGPRRDDRDRGRDSRSYNR
DRADYSRDDRDRRDGSRDDRDKRDYSRDNRDRRDYSKDDRDRRDYSKDDRDRRDYNKDDR
DRRDYNKDDKEKRDYNRDDREKRDYNRDDREKRDYNRDDREKRDYNRDDREKRDYNREMK
GENAILQLRLQQR